Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37761 * 119.78780 * 2 1 4 4 C 1.40761 * 120.04722 * 179.97438 * 3 2 1 5 5 C 1.41432 * 120.17169 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00224 * 24.34926 * 5 4 3 7 7 C 1.39939 * 120.00213 * 204.35283 * 5 4 3 8 8 N 1.30829 * 119.99525 * 17.72980 * 7 5 4 9 9 Si 1.86796 * 120.00446 * 197.72730 * 7 5 4 10 10 H 1.48498 * 109.46915 * 59.99814 * 9 7 5 11 11 H 1.48499 * 109.47523 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46946 * 300.00084 * 9 7 5 13 13 C 1.40499 * 119.65239 * 359.72657 * 4 3 2 14 14 C 1.39049 * 119.59151 * 0.54399 * 13 4 3 15 15 C 1.43195 * 120.03142 * 179.72684 * 14 13 4 16 16 N 4.80894 * 134.16447 * 179.97438 * 2 1 3 17 17 C 1.38314 * 119.79252 * 179.97438 * 2 1 3 18 18 C 1.50701 * 119.82228 * 0.04598 * 17 2 1 19 19 F 1.39898 * 109.46966 * 209.97623 * 18 17 2 20 20 F 1.39899 * 109.47187 * 329.97944 * 18 17 2 21 21 F 1.39900 * 109.47019 * 89.97702 * 18 17 2 22 22 H 1.08997 * 109.47925 * 270.02712 * 1 2 3 23 23 H 1.09008 * 109.47042 * 30.02665 * 1 2 3 24 24 H 1.08998 * 109.47192 * 150.02137 * 1 2 3 25 25 H 1.07999 * 119.97774 * 359.97438 * 3 2 1 26 26 H 0.97005 * 119.99898 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.20570 * 180.29924 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1956 0.0000 4 6 3.5989 1.2020 0.0005 5 6 4.3042 2.4279 0.0000 6 1 3.8348 3.3212 0.3848 7 6 5.6103 2.4835 -0.4993 8 7 6.0578 1.5248 -1.2689 9 14 6.7149 3.9265 -0.0669 10 1 6.8909 3.9912 1.4062 11 1 8.0384 3.7490 -0.7167 12 1 6.0934 5.1869 -0.5470 13 6 4.2996 -0.0159 0.0069 14 6 3.5940 -1.2140 0.0011 15 6 4.2985 -2.4606 0.0016 16 7 4.8575 -3.4497 0.0015 17 6 2.1942 -1.2003 0.0005 18 6 1.4319 -2.5003 0.0001 19 9 2.1812 -3.4805 0.6597 20 9 0.2104 -2.3249 0.6591 21 9 1.1965 -2.9024 -1.3191 22 1 -0.3635 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6475 2.1287 -0.0004 26 1 6.9633 1.5631 -1.6147 27 1 5.3795 -0.0214 0.0123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650541.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -112.807184 kcal Electronic energy + Delta-G solvation = -18551.833958 eV Core-core repulsion = 15052.250723 eV Total energy + Delta-G solvation = -3499.583235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.52577 -47.08203 -46.91911 -38.43246 -35.72583 -34.47490 -31.73095 -31.00505 -27.22714 -26.25817 -23.90871 -22.46371 -20.77730 -18.18126 -17.84277 -17.45335 -17.38164 -16.38330 -15.42188 -14.67056 -14.09198 -13.78839 -13.75063 -13.47564 -13.33967 -13.22027 -13.13516 -13.04674 -12.62425 -12.57512 -12.17506 -12.06358 -11.77706 -11.54377 -11.24294 -11.02347 -10.75753 -10.66272 -10.17582 -10.04799 -9.55883 -8.06079 -7.78430 -7.23538 -4.87199 1.74479 2.34384 2.84011 2.87954 2.90675 3.40471 3.50777 3.61744 3.74815 4.26350 4.60968 4.82573 4.86329 5.00122 5.31529 5.67209 5.82515 6.15931 6.32438 6.43858 6.49767 6.66023 6.80086 6.91581 7.14834 7.37278 7.49992 7.68315 8.02396 8.24665 8.35146 8.36743 9.69113 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.007230 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.410851 B = 3871.849268 C = 4575.055976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.003 4.003 3 C -0.212 4.212 4 C 0.122 3.878 5 C -0.431 4.431 6 H 0.092 0.908 7 C 0.071 3.929 8 N -0.770 5.770 9 Si 0.919 3.081 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.260 1.260 13 C -0.110 4.110 14 C 0.026 3.974 15 C 0.269 3.731 16 N -0.449 5.449 17 C -0.291 4.291 18 C 0.513 3.487 19 F -0.188 7.188 20 F -0.185 7.185 21 F -0.191 7.191 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.292 0.708 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 1.694 1.577 5.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.003 4.003 3 C -0.232 4.232 4 C 0.118 3.882 5 C -0.458 4.458 6 H 0.110 0.890 7 C -0.151 4.151 8 N -0.392 5.392 9 Si 0.742 3.258 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.185 1.185 13 C -0.132 4.132 14 C 0.022 3.978 15 C -0.045 4.045 16 N -0.126 5.126 17 C -0.295 4.295 18 C 0.459 3.541 19 F -0.169 7.169 20 F -0.166 7.166 21 F -0.173 7.173 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.104 0.896 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.775 0.045 1.415 4.032 hybrid contribution 0.245 0.689 0.013 0.731 sum -3.531 0.734 1.428 3.878 Atomic orbital electron populations 1.21084 0.92266 1.02192 1.02088 1.18939 0.94413 0.91660 0.95326 1.20906 0.93830 0.95384 1.13057 1.17594 0.91147 0.92703 0.86719 1.19825 0.97151 0.95864 1.32956 0.88982 1.26139 0.98610 0.98053 0.92321 1.69758 1.18275 1.31373 1.19798 0.86156 0.78569 0.80714 0.80366 1.18270 1.19922 1.18471 1.21466 1.00066 0.89255 1.02390 1.15438 0.90066 0.86987 1.05305 1.26054 0.92681 0.92770 0.92986 1.81038 1.10306 1.11272 1.09971 1.18745 0.91650 0.90252 1.28894 1.18501 0.77005 0.85517 0.73035 1.93133 1.76277 1.66110 1.81429 1.93090 1.46711 1.95353 1.81492 1.93159 1.94784 1.92206 1.37118 0.91249 0.92105 0.91727 0.87152 0.89623 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.39 36.00 0.30 -1.61 15 2 C 0.00 -0.05 5.84 -104.77 -0.61 -0.67 15 3 C -0.21 -4.34 9.42 -38.80 -0.37 -4.71 15 4 C 0.12 2.75 5.57 -106.88 -0.60 2.15 15 5 C -0.43 -9.50 9.05 -37.73 -0.34 -9.84 15 6 H 0.09 1.89 7.91 -52.49 -0.41 1.47 15 7 C 0.07 1.51 5.14 -17.34 -0.09 1.42 15 8 N -0.77 -17.24 10.96 55.55 0.61 -16.63 15 9 Si 0.92 15.92 29.59 -169.99 -5.03 10.89 15 10 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 11 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 12 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 13 C -0.11 -2.51 8.39 -38.43 -0.32 -2.83 15 14 C 0.03 0.58 5.70 -107.02 -0.61 -0.03 15 15 C 0.27 6.04 12.52 -22.47 -0.28 5.75 15 16 N -0.45 -10.27 18.37 41.84 0.77 -9.50 15 17 C -0.29 -6.10 5.51 -103.94 -0.57 -6.67 15 18 C 0.51 10.16 2.69 36.01 0.10 10.26 15 19 F -0.19 -3.90 14.48 2.25 0.03 -3.87 15 20 F -0.19 -3.32 13.70 2.25 0.03 -3.29 15 21 F -0.19 -3.79 17.30 2.25 0.04 -3.75 15 22 H 0.07 1.02 8.03 -51.93 -0.42 0.61 15 23 H 0.06 0.86 8.08 -51.92 -0.42 0.44 15 24 H 0.06 1.03 6.00 -51.93 -0.31 0.72 15 25 H 0.11 2.04 8.06 -52.49 -0.42 1.62 15 26 H 0.29 5.97 8.30 -40.82 -0.34 5.63 15 27 H 0.13 3.17 6.16 -52.49 -0.32 2.84 15 LS Contribution 256.47 15.07 3.87 3.87 Total: -1.00 -23.66 256.47 -4.52 -28.18 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -1.44 Total: 0.90 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.39 Total: -6.78 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 1.38 Total: -26.14 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 0.10 Total: -10.91 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -23.66 -4.52 -28.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650541.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.627 kcal (2) G-P(sol) polarization free energy of solvation -23.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds