Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37761 * 119.78780 * 2 1 4 4 C 1.40761 * 120.04722 * 179.97438 * 3 2 1 5 5 C 1.41432 * 120.17169 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00224 * 24.34926 * 5 4 3 7 7 C 1.39939 * 120.00213 * 204.35283 * 5 4 3 8 8 N 1.30829 * 119.99525 * 17.72980 * 7 5 4 9 9 Si 1.86796 * 120.00446 * 197.72730 * 7 5 4 10 10 H 1.48498 * 109.46915 * 59.99814 * 9 7 5 11 11 H 1.48499 * 109.47523 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46946 * 300.00084 * 9 7 5 13 13 C 1.40499 * 119.65239 * 359.72657 * 4 3 2 14 14 C 1.39049 * 119.59151 * 0.54399 * 13 4 3 15 15 C 1.43195 * 120.03142 * 179.72684 * 14 13 4 16 16 N 4.80894 * 134.16447 * 179.97438 * 2 1 3 17 17 C 1.38314 * 119.79252 * 179.97438 * 2 1 3 18 18 C 1.50701 * 119.82228 * 0.04598 * 17 2 1 19 19 F 1.39898 * 109.46966 * 209.97623 * 18 17 2 20 20 F 1.39899 * 109.47187 * 329.97944 * 18 17 2 21 21 F 1.39900 * 109.47019 * 89.97702 * 18 17 2 22 22 H 1.08997 * 109.47925 * 270.02712 * 1 2 3 23 23 H 1.09008 * 109.47042 * 30.02665 * 1 2 3 24 24 H 1.08998 * 109.47192 * 150.02137 * 1 2 3 25 25 H 1.07999 * 119.97774 * 359.97438 * 3 2 1 26 26 H 0.97005 * 119.99898 * 180.02562 * 8 7 5 27 27 H 1.08000 * 120.20570 * 180.29924 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1956 0.0000 4 6 3.5989 1.2020 0.0005 5 6 4.3042 2.4279 0.0000 6 1 3.8348 3.3212 0.3848 7 6 5.6103 2.4835 -0.4993 8 7 6.0578 1.5248 -1.2689 9 14 6.7149 3.9265 -0.0669 10 1 6.8909 3.9912 1.4062 11 1 8.0384 3.7490 -0.7167 12 1 6.0934 5.1869 -0.5470 13 6 4.2996 -0.0159 0.0069 14 6 3.5940 -1.2140 0.0011 15 6 4.2985 -2.4606 0.0016 16 7 4.8575 -3.4497 0.0015 17 6 2.1942 -1.2003 0.0005 18 6 1.4319 -2.5003 0.0001 19 9 2.1812 -3.4805 0.6597 20 9 0.2104 -2.3249 0.6591 21 9 1.1965 -2.9024 -1.3191 22 1 -0.3635 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6475 2.1287 -0.0004 26 1 6.9633 1.5631 -1.6147 27 1 5.3795 -0.0214 0.0123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650541.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -122.442083 kcal Electronic energy + Delta-G solvation = -18552.251759 eV Core-core repulsion = 15052.250723 eV Total energy + Delta-G solvation = -3500.001036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.10244 -48.65068 -48.50209 -40.08158 -37.50642 -36.08227 -33.30697 -32.66845 -28.83990 -27.74947 -25.54555 -24.11503 -22.39688 -19.79236 -19.42516 -19.06765 -18.98394 -18.06220 -16.97838 -16.26971 -15.66202 -15.35557 -15.29058 -15.08771 -14.96435 -14.80463 -14.75629 -14.68739 -14.12742 -14.08236 -13.83343 -13.76731 -13.30517 -13.03909 -12.72223 -12.50550 -12.25790 -12.13675 -11.80266 -11.60626 -11.13548 -9.74358 -9.41704 -8.83368 -6.55622 0.03416 0.71038 1.43587 1.49222 1.57236 1.62561 1.89208 2.06256 2.17823 2.59072 2.92732 3.16260 3.25832 3.36355 3.69783 4.19287 4.49922 4.76396 4.82697 4.93990 5.01653 5.13522 5.23111 5.25859 5.53078 5.72864 5.87188 6.04033 6.33495 6.49261 6.69860 6.70425 8.11652 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.007230 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.410851 B = 3871.849268 C = 4575.055976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.002 4.002 3 C -0.213 4.213 4 C 0.100 3.900 5 C -0.453 4.453 6 H 0.104 0.896 7 C 0.036 3.964 8 N -0.803 5.803 9 Si 0.986 3.014 10 H -0.257 1.257 11 H -0.274 1.274 12 H -0.252 1.252 13 C -0.127 4.127 14 C 0.017 3.983 15 C 0.273 3.727 16 N -0.461 5.461 17 C -0.300 4.300 18 C 0.518 3.482 19 F -0.195 7.195 20 F -0.171 7.171 21 F -0.191 7.191 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.297 0.703 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 2.849 1.863 6.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.233 4.233 4 C 0.097 3.903 5 C -0.480 4.480 6 H 0.122 0.878 7 C -0.183 4.183 8 N -0.427 5.427 9 Si 0.807 3.193 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.176 1.176 13 C -0.149 4.149 14 C 0.013 3.987 15 C -0.040 4.040 16 N -0.138 5.138 17 C -0.305 4.305 18 C 0.464 3.536 19 F -0.176 7.176 20 F -0.152 7.152 21 F -0.173 7.173 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.149 0.851 26 H 0.108 0.892 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.794 1.190 1.700 5.224 hybrid contribution 0.493 0.298 -0.083 0.582 sum -4.301 1.488 1.617 4.830 Atomic orbital electron populations 1.21140 0.89316 1.03398 1.03501 1.19343 0.96516 0.90734 0.93666 1.21167 0.93165 0.96666 1.12272 1.17918 0.92399 0.92796 0.87227 1.20156 0.98103 0.96175 1.33535 0.87823 1.26947 0.99494 1.00304 0.91559 1.69815 1.18901 1.33164 1.20790 0.85142 0.76606 0.77690 0.79903 1.18109 1.19838 1.17585 1.21377 0.99501 0.89968 1.04035 1.15558 0.90837 0.86535 1.05781 1.26192 0.92433 0.92769 0.92638 1.81021 1.10632 1.11674 1.10502 1.18990 0.91291 0.91484 1.28696 1.18317 0.77324 0.84854 0.73080 1.93122 1.76607 1.66325 1.81571 1.93117 1.45654 1.95246 1.81186 1.93158 1.94781 1.92156 1.37168 0.89553 0.89897 0.91609 0.85064 0.89155 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 8.39 71.23 0.60 -2.77 15 2 C 0.00 -0.07 5.84 -19.96 -0.12 -0.19 15 3 C -0.21 -8.40 9.42 22.77 0.21 -8.19 15 4 C 0.10 4.49 5.57 -21.32 -0.12 4.37 15 5 C -0.45 -19.79 9.05 23.47 0.21 -19.57 15 6 H 0.10 4.14 7.91 -2.91 -0.02 4.11 15 7 C 0.04 1.52 5.14 85.25 0.44 1.96 15 8 N -0.80 -36.45 10.96 21.83 0.24 -36.21 15 9 Si 0.99 31.90 29.59 68.60 2.03 33.93 15 10 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 11 H -0.27 -8.72 7.11 99.48 0.71 -8.01 15 12 H -0.25 -7.77 7.11 99.48 0.71 -7.06 15 13 C -0.13 -5.89 8.39 23.02 0.19 -5.69 15 14 C 0.02 0.75 5.70 -21.42 -0.12 0.63 15 15 C 0.27 12.36 12.52 88.33 1.11 13.47 15 16 N -0.46 -21.19 18.37 19.00 0.35 -20.84 15 17 C -0.30 -12.28 5.51 -19.42 -0.11 -12.39 15 18 C 0.52 19.78 2.69 71.24 0.19 19.97 15 19 F -0.19 -7.91 14.48 44.97 0.65 -7.26 15 20 F -0.17 -5.73 13.70 44.97 0.62 -5.11 15 21 F -0.19 -7.32 17.30 44.97 0.78 -6.54 15 22 H 0.09 2.23 8.03 -2.39 -0.02 2.21 15 23 H 0.08 2.03 8.08 -2.38 -0.02 2.01 15 24 H 0.07 1.89 6.00 -2.39 -0.01 1.87 15 25 H 0.13 4.54 8.06 -2.91 -0.02 4.51 15 26 H 0.30 12.30 8.30 -92.70 -0.77 11.53 15 27 H 0.12 5.83 6.16 -2.91 -0.02 5.81 15 Total: -1.00 -49.32 256.47 8.39 -40.94 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.23 Total: 9.51 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 2.49 Total: -8.40 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.59 Total: -57.05 kcal Atomic # 9 Polarization: -20.96 SS G_CDS: 2.05 Total: -18.92 kcal Atomic # 14 Polarization: 31.90 SS G_CDS: 2.03 Total: 33.93 kcal Total: -49.32 8.39 -40.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650541.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.507 kcal (2) G-P(sol) polarization free energy of solvation -49.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds