Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37753 * 119.97082 * 2 1 4 4 C 1.38322 * 120.41415 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.82528 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.47355 * 0.02562 * 5 4 3 7 7 F 1.39913 * 109.46956 * 120.00141 * 5 4 3 8 8 F 1.39900 * 109.47428 * 239.99676 * 5 4 3 9 9 C 1.39991 * 120.34886 * 0.02562 * 4 3 2 10 10 C 1.43196 * 120.02588 * 180.02562 * 9 4 3 11 11 N 4.80903 * 137.54272 * 359.97438 * 3 1 2 12 12 C 1.39040 * 119.93937 * 0.02562 * 9 4 3 13 13 C 1.40509 * 119.59001 * 359.97438 * 12 9 4 14 14 C 1.41437 * 120.17310 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99903 * 205.47772 * 14 13 12 16 16 C 1.39931 * 120.00101 * 25.47185 * 14 13 12 17 17 N 1.30827 * 120.00343 * 15.32292 * 16 14 13 18 18 Si 1.86805 * 119.99812 * 195.32631 * 16 14 13 19 19 H 1.48501 * 109.47106 * 60.00077 * 18 16 14 20 20 H 1.48500 * 109.47004 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47069 * 299.99904 * 18 16 14 22 22 H 1.09010 * 109.46886 * 90.00103 * 1 2 3 23 23 H 1.08997 * 109.47120 * 209.99880 * 1 2 3 24 24 H 1.08997 * 109.47093 * 330.00294 * 1 2 3 25 25 H 1.08001 * 119.79543 * 359.71726 * 3 2 1 26 26 H 1.08003 * 120.20961 * 180.02562 * 12 9 4 27 27 H 0.96998 * 119.99899 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1952 1.1933 0.0000 4 6 3.5784 1.2040 0.0005 5 6 4.3178 2.5171 -0.0001 6 9 3.3973 3.5707 -0.0005 7 9 5.1209 2.6006 1.1426 8 9 5.1218 2.5992 -1.1420 9 6 4.2951 0.0015 0.0005 10 6 5.7269 0.0206 0.0016 11 7 6.8629 0.0357 0.0015 12 6 3.6153 -1.2114 -0.0005 13 6 2.2102 -1.2193 -0.0011 14 6 1.5062 -2.4460 -0.0016 15 1 0.5053 -2.4940 -0.4043 16 6 2.1066 -3.5975 0.5195 17 7 3.1743 -3.4967 1.2689 18 14 1.3837 -5.2789 0.1452 19 1 1.3891 -5.5043 -1.3226 20 1 2.1982 -6.3272 0.8105 21 1 -0.0113 -5.3415 0.6505 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6514 2.1264 -0.0046 26 1 4.1638 -2.1418 -0.0001 27 1 3.5902 -4.2949 1.6304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650754.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = -122.159089 kcal Electronic energy + Delta-G solvation = -18395.885801 eV Core-core repulsion = 14895.897036 eV Total energy + Delta-G solvation = -3499.988764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.45442 -47.00819 -46.90490 -38.46233 -35.83226 -34.23420 -32.18061 -30.46418 -27.31928 -26.45299 -24.11167 -21.54733 -20.89325 -18.67967 -17.78402 -17.70901 -17.35687 -16.09872 -15.26571 -14.48661 -13.93007 -13.87496 -13.62831 -13.43477 -13.39492 -13.17234 -13.11749 -13.08209 -12.64699 -12.55366 -12.26505 -12.13269 -11.71771 -11.42925 -11.30421 -11.14006 -10.83298 -10.65553 -10.11923 -9.98054 -9.60882 -8.02027 -7.79255 -7.21669 -4.86806 1.71649 2.36689 2.84209 2.87572 2.89955 3.36491 3.48713 3.61122 3.71715 4.26019 4.59700 4.81814 4.85875 4.98501 5.32102 5.84362 6.08554 6.20922 6.42536 6.49706 6.62007 6.74889 6.79610 6.96485 7.15181 7.32441 7.48957 7.70887 8.00861 8.21319 8.35007 8.37125 9.69942 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.007344 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.607905 B = 3811.596492 C = 4571.654920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.184 4.184 3 C -0.035 4.035 4 C -0.284 4.284 5 C 0.512 3.488 6 F -0.188 7.188 7 F -0.190 7.190 8 F -0.190 7.190 9 C 0.019 3.981 10 C 0.267 3.733 11 N -0.448 5.448 12 C -0.103 4.103 13 C 0.121 3.879 14 C -0.428 4.428 15 H 0.094 0.906 16 C 0.070 3.930 17 N -0.772 5.772 18 Si 0.919 3.081 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.260 1.260 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 2.259 -1.439 5.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.186 4.186 3 C -0.054 4.054 4 C -0.289 4.289 5 C 0.458 3.542 6 F -0.170 7.170 7 F -0.172 7.172 8 F -0.172 7.172 9 C 0.015 3.985 10 C -0.048 4.048 11 N -0.124 5.124 12 C -0.125 4.125 13 C 0.118 3.882 14 C -0.455 4.455 15 H 0.112 0.888 16 C -0.152 4.152 17 N -0.395 5.395 18 Si 0.742 3.258 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.185 1.185 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.131 0.869 26 H 0.155 0.845 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.498 2.169 -1.279 3.547 hybrid contribution -0.410 -0.483 0.006 0.634 sum -2.908 1.686 -1.272 3.594 Atomic orbital electron populations 1.20460 0.92289 1.01369 1.00414 1.19780 0.95107 0.92055 1.11617 1.20113 0.91025 0.97676 0.96568 1.18893 0.94208 0.88350 1.27419 1.18485 0.76857 0.85752 0.73059 1.93073 1.66639 1.60945 1.96329 1.93162 1.75407 1.96837 1.51752 1.93154 1.75366 1.96848 1.51830 1.15438 0.82786 0.94248 1.06016 1.26149 0.93243 0.92685 0.92684 1.81050 1.12374 1.08569 1.10404 1.21505 0.94661 0.94676 1.01660 1.17483 0.90940 0.92341 0.87453 1.19835 1.01863 0.91725 1.32034 0.88791 1.26141 0.94236 1.02386 0.92422 1.69738 1.16404 1.33123 1.20209 0.86156 0.80071 0.79307 0.80277 1.18304 1.19946 1.18466 0.93211 0.91516 0.93593 0.86860 0.84527 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.39 36.01 0.34 -1.15 15 2 C -0.18 -3.70 5.94 -103.85 -0.62 -4.32 15 3 C -0.04 -0.69 9.04 -39.73 -0.36 -1.05 15 4 C -0.28 -5.93 5.42 -103.94 -0.56 -6.49 15 5 C 0.51 10.18 2.88 36.00 0.10 10.29 15 6 F -0.19 -3.43 15.95 2.25 0.04 -3.40 15 7 F -0.19 -3.91 16.51 2.25 0.04 -3.87 15 8 F -0.19 -3.85 16.50 2.25 0.04 -3.81 15 9 C 0.02 0.42 5.70 -107.02 -0.61 -0.19 15 10 C 0.27 5.96 13.13 -22.47 -0.30 5.67 15 11 N -0.45 -10.21 18.54 41.84 0.78 -9.43 15 12 C -0.10 -2.34 8.39 -38.43 -0.32 -2.66 15 13 C 0.12 2.69 5.57 -106.87 -0.60 2.10 15 14 C -0.43 -9.23 8.13 -37.73 -0.31 -9.54 15 15 H 0.09 1.88 6.84 -52.49 -0.36 1.52 15 16 C 0.07 1.47 5.19 -17.35 -0.09 1.38 15 17 N -0.77 -17.14 10.87 55.55 0.60 -16.53 15 18 Si 0.92 15.78 29.59 -169.99 -5.03 10.75 15 19 H -0.26 -4.45 7.11 56.52 0.40 -4.04 15 20 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 21 H -0.26 -4.41 7.11 56.52 0.40 -4.00 15 22 H 0.05 0.76 8.14 -51.92 -0.42 0.34 15 23 H 0.07 1.13 6.75 -51.93 -0.35 0.78 15 24 H 0.05 0.68 8.08 -51.93 -0.42 0.26 15 25 H 0.11 1.96 7.13 -52.49 -0.37 1.59 15 26 H 0.14 3.20 6.13 -52.48 -0.32 2.88 15 27 H 0.29 5.93 8.30 -40.82 -0.34 5.59 15 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -23.40 259.44 -4.33 -27.73 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -1.38 Total: 0.60 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.32 Total: -5.96 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 1.38 Total: -25.97 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 0.11 Total: -11.08 kcal Atomic # 14 Polarization: 15.78 SS G_CDS: -5.03 Total: 10.75 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -23.40 -4.33 -27.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650754.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.427 kcal (2) G-P(sol) polarization free energy of solvation -23.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds