Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37753 * 119.97082 * 2 1 4 4 C 1.38322 * 120.41415 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.82528 * 179.97438 * 4 3 2 6 6 F 1.39901 * 109.47355 * 0.02562 * 5 4 3 7 7 F 1.39913 * 109.46956 * 120.00141 * 5 4 3 8 8 F 1.39900 * 109.47428 * 239.99676 * 5 4 3 9 9 C 1.39991 * 120.34886 * 0.02562 * 4 3 2 10 10 C 1.43196 * 120.02588 * 180.02562 * 9 4 3 11 11 N 4.80903 * 137.54272 * 359.97438 * 3 1 2 12 12 C 1.39040 * 119.93937 * 0.02562 * 9 4 3 13 13 C 1.40509 * 119.59001 * 359.97438 * 12 9 4 14 14 C 1.41437 * 120.17310 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99903 * 205.47772 * 14 13 12 16 16 C 1.39931 * 120.00101 * 25.47185 * 14 13 12 17 17 N 1.30827 * 120.00343 * 15.32292 * 16 14 13 18 18 Si 1.86805 * 119.99812 * 195.32631 * 16 14 13 19 19 H 1.48501 * 109.47106 * 60.00077 * 18 16 14 20 20 H 1.48500 * 109.47004 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47069 * 299.99904 * 18 16 14 22 22 H 1.09010 * 109.46886 * 90.00103 * 1 2 3 23 23 H 1.08997 * 109.47120 * 209.99880 * 1 2 3 24 24 H 1.08997 * 109.47093 * 330.00294 * 1 2 3 25 25 H 1.08001 * 119.79543 * 359.71726 * 3 2 1 26 26 H 1.08003 * 120.20961 * 180.02562 * 12 9 4 27 27 H 0.96998 * 119.99899 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1952 1.1933 0.0000 4 6 3.5784 1.2040 0.0005 5 6 4.3178 2.5171 -0.0001 6 9 3.3973 3.5707 -0.0005 7 9 5.1209 2.6006 1.1426 8 9 5.1218 2.5992 -1.1420 9 6 4.2951 0.0015 0.0005 10 6 5.7269 0.0206 0.0016 11 7 6.8629 0.0357 0.0015 12 6 3.6153 -1.2114 -0.0005 13 6 2.2102 -1.2193 -0.0011 14 6 1.5062 -2.4460 -0.0016 15 1 0.5053 -2.4940 -0.4043 16 6 2.1066 -3.5975 0.5195 17 7 3.1743 -3.4967 1.2689 18 14 1.3837 -5.2789 0.1452 19 1 1.3891 -5.5043 -1.3226 20 1 2.1982 -6.3272 0.8105 21 1 -0.0113 -5.3415 0.6505 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6514 2.1264 -0.0046 26 1 4.1638 -2.1418 -0.0001 27 1 3.5902 -4.2949 1.6304 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650754.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = -131.448501 kcal Electronic energy + Delta-G solvation = -18396.288620 eV Core-core repulsion = 14895.897036 eV Total energy + Delta-G solvation = -3500.391584 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.03990 -48.55684 -48.52426 -40.09682 -37.59578 -35.84665 -33.76284 -32.09909 -28.91721 -27.96524 -25.73545 -23.17938 -22.49547 -20.31966 -19.38218 -19.28991 -18.96656 -17.72783 -16.80505 -16.09090 -15.55021 -15.45674 -15.18403 -15.02111 -15.01440 -14.84867 -14.71011 -14.68018 -14.17505 -14.05559 -13.96218 -13.78034 -13.21212 -12.92093 -12.78186 -12.61026 -12.33306 -12.13082 -11.71276 -11.53142 -11.15959 -9.68142 -9.41606 -8.79436 -6.51888 0.02410 0.73884 1.44789 1.49889 1.57496 1.58125 1.88000 2.04096 2.18563 2.60632 2.92245 3.15683 3.26142 3.35962 3.69719 4.30193 4.61456 4.77869 4.91640 5.01698 5.16291 5.19079 5.26409 5.43942 5.56002 5.67260 5.92030 6.08551 6.33539 6.48317 6.72860 6.73602 8.14385 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.007344 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.607905 B = 3811.596492 C = 4571.654920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.183 4.183 3 C -0.036 4.036 4 C -0.289 4.289 5 C 0.516 3.484 6 F -0.175 7.175 7 F -0.195 7.195 8 F -0.193 7.193 9 C 0.008 3.992 10 C 0.271 3.729 11 N -0.461 5.461 12 C -0.120 4.120 13 C 0.097 3.903 14 C -0.445 4.445 15 H 0.107 0.893 16 C 0.035 3.965 17 N -0.806 5.806 18 Si 0.985 3.015 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.251 1.251 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.121 0.879 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 2.458 -1.721 6.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.185 4.185 3 C -0.054 4.054 4 C -0.294 4.294 5 C 0.463 3.537 6 F -0.156 7.156 7 F -0.177 7.177 8 F -0.174 7.174 9 C 0.004 3.996 10 C -0.043 4.043 11 N -0.138 5.138 12 C -0.143 4.143 13 C 0.094 3.906 14 C -0.471 4.471 15 H 0.125 0.875 16 C -0.184 4.184 17 N -0.430 5.430 18 Si 0.805 3.195 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.175 1.175 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.139 0.861 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.196 2.386 -1.562 5.073 hybrid contribution 0.106 -0.481 0.099 0.502 sum -4.090 1.905 -1.462 4.743 Atomic orbital electron populations 1.20503 0.89682 1.02323 1.01769 1.20220 0.97080 0.91416 1.09822 1.20412 0.90541 0.98728 0.95707 1.19098 0.94974 0.88267 1.27076 1.18333 0.76822 0.85768 0.72823 1.93096 1.66068 1.60228 1.96253 1.93154 1.75596 1.96863 1.52040 1.93150 1.75484 1.96864 1.51948 1.15543 0.82545 0.94760 1.06713 1.26303 0.93401 0.92279 0.92303 1.81032 1.12659 1.09049 1.11014 1.21427 0.95266 0.94285 1.03284 1.17824 0.90908 0.93753 0.88107 1.20146 1.02576 0.92059 1.32370 0.87500 1.26936 0.94237 1.05528 0.91670 1.69803 1.17720 1.34194 1.21267 0.85167 0.79522 0.74937 0.79881 1.18145 1.20066 1.17513 0.91494 0.91907 0.91310 0.84081 0.86114 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.63 9.39 71.24 0.67 -1.96 15 2 C -0.18 -7.07 5.94 -19.36 -0.12 -7.19 15 3 C -0.04 -1.32 9.04 22.17 0.20 -1.12 15 4 C -0.29 -11.77 5.42 -19.42 -0.11 -11.88 15 5 C 0.52 19.80 2.88 71.23 0.21 20.01 15 6 F -0.18 -5.96 15.95 44.97 0.72 -5.24 15 7 F -0.19 -7.82 16.51 44.97 0.74 -7.08 15 8 F -0.19 -7.59 16.50 44.97 0.74 -6.84 15 9 C 0.01 0.37 5.70 -21.42 -0.12 0.25 15 10 C 0.27 12.22 13.13 88.33 1.16 13.38 15 11 N -0.46 -21.14 18.54 19.00 0.35 -20.79 15 12 C -0.12 -5.55 8.39 23.02 0.19 -5.36 15 13 C 0.10 4.30 5.57 -21.32 -0.12 4.18 15 14 C -0.44 -18.92 8.13 23.47 0.19 -18.73 15 15 H 0.11 4.13 6.84 -2.91 -0.02 4.11 15 16 C 0.03 1.45 5.19 85.25 0.44 1.89 15 17 N -0.81 -36.27 10.87 21.82 0.24 -36.03 15 18 Si 0.98 31.57 29.59 68.60 2.03 33.60 15 19 H -0.26 -8.13 7.11 99.48 0.71 -7.42 15 20 H -0.28 -8.80 7.11 99.48 0.71 -8.10 15 21 H -0.25 -7.65 7.11 99.48 0.71 -6.94 15 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.06 1.97 6.75 -2.39 -0.02 1.95 15 24 H 0.07 1.78 8.08 -2.39 -0.02 1.76 15 25 H 0.14 4.39 7.13 -2.91 -0.02 4.37 15 26 H 0.12 5.88 6.13 -2.91 -0.02 5.86 15 27 H 0.30 12.20 8.30 -92.71 -0.77 11.44 15 Total: -1.00 -48.73 259.44 8.66 -40.07 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.24 Total: 8.83 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 2.60 Total: -6.51 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.59 Total: -56.82 kcal Atomic # 9 Polarization: -21.37 SS G_CDS: 2.20 Total: -19.17 kcal Atomic # 14 Polarization: 31.57 SS G_CDS: 2.03 Total: 33.60 kcal Total: -48.73 8.66 -40.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650754.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.380 kcal (2) G-P(sol) polarization free energy of solvation -48.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds