Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37454 * 120.07830 * 2 1 4 4 C 1.38696 * 121.19355 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.35431 * 179.97438 * 4 3 2 6 6 F 1.39893 * 109.47825 * 89.99402 * 5 4 3 7 7 F 1.39901 * 109.46994 * 209.99788 * 5 4 3 8 8 F 1.39905 * 109.46998 * 329.99241 * 5 4 3 9 9 C 1.38041 * 121.29076 * 359.97438 * 4 3 2 10 10 C 1.39433 * 120.04605 * 359.71750 * 9 4 3 11 11 C 1.43198 * 120.57769 * 180.30150 * 10 9 4 12 12 N 4.87511 * 136.33455 * 179.65709 * 2 1 3 13 13 C 1.40816 * 120.07900 * 179.97438 * 2 1 3 14 14 C 1.40793 * 120.61049 * 0.02562 * 13 2 1 15 15 H 1.07995 * 120.00076 * 318.08757 * 14 13 2 16 16 C 1.40261 * 119.99792 * 138.09036 * 14 13 2 17 17 N 1.30651 * 119.99801 * 338.50575 * 16 14 13 18 18 Si 1.86792 * 119.99808 * 158.51064 * 16 14 13 19 19 H 1.48500 * 109.47687 * 59.99902 * 18 16 14 20 20 H 1.48507 * 109.47013 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47383 * 299.99418 * 18 16 14 22 22 H 1.09004 * 109.47198 * 270.02641 * 1 2 3 23 23 H 1.08999 * 109.47164 * 30.02523 * 1 2 3 24 24 H 1.09001 * 109.47029 * 150.02203 * 1 2 3 25 25 H 1.07997 * 119.40480 * 359.97438 * 3 2 1 26 26 H 1.08007 * 119.97528 * 180.02562 * 9 4 3 27 27 H 0.96994 * 120.00069 * 185.44041 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1894 0.0000 4 6 3.5826 1.2164 0.0005 5 6 4.2956 2.5441 -0.0001 6 9 4.5157 2.9560 1.3186 7 9 5.5228 2.4139 -0.6590 8 9 3.5102 3.4949 -0.6607 9 6 4.3223 0.0510 0.0016 10 6 3.6775 -1.1852 0.0081 11 6 4.4337 -2.4013 0.0158 12 7 5.0335 -3.3659 0.0201 13 6 2.2127 -1.2185 0.0005 14 6 1.5235 -2.4462 0.0006 15 1 0.6520 -2.5762 0.6250 16 6 1.9688 -3.5004 -0.8104 17 7 2.7229 -3.2527 -1.8482 18 14 1.4835 -5.2585 -0.4068 19 1 0.0041 -5.3831 -0.4367 20 1 2.0777 -6.1787 -1.4096 21 1 1.9827 -5.6115 0.9465 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6475 2.1198 -0.0004 26 1 5.4014 0.0968 0.0024 27 1 2.9657 -3.9705 -2.4537 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = -134.928233 kcal Electronic energy + Delta-G solvation = -18352.262492 eV Core-core repulsion = 14851.720015 eV Total energy + Delta-G solvation = -3500.542476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.92054 -48.45130 -48.37844 -39.85752 -37.08087 -35.76331 -33.68847 -32.21213 -28.88033 -27.58435 -25.49860 -24.27600 -21.91737 -19.54939 -19.40622 -19.24594 -18.87527 -17.41911 -17.27658 -16.15369 -15.94851 -15.29732 -15.18301 -14.87477 -14.69331 -14.62914 -14.58021 -14.31211 -14.13758 -13.93702 -13.66264 -13.53758 -13.36090 -13.10945 -12.76744 -12.65949 -12.33114 -12.29127 -11.84958 -11.50587 -11.14040 -9.44179 -9.40889 -8.93621 -6.66066 0.29821 0.60729 1.27704 1.37623 1.39169 1.95652 2.01660 2.13447 2.24784 2.68630 3.12101 3.29831 3.34951 3.71993 3.79335 4.13043 4.42154 4.73227 4.78851 4.94312 5.04363 5.14688 5.23248 5.50907 5.56367 5.57303 5.86443 6.01731 6.28288 6.58000 6.64815 7.02896 8.01015 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.007276 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.715793 B = 3847.411563 C = 4445.684076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.181 4.181 3 C -0.024 4.024 4 C -0.308 4.308 5 C 0.525 3.475 6 F -0.187 7.187 7 F -0.190 7.190 8 F -0.183 7.183 9 C 0.005 3.995 10 C -0.155 4.155 11 C 0.322 3.678 12 N -0.523 5.523 13 C 0.158 3.842 14 C -0.465 4.465 15 H 0.111 0.889 16 C 0.052 3.948 17 N -0.787 5.787 18 Si 0.952 3.048 19 H -0.235 1.235 20 H -0.279 1.279 21 H -0.269 1.269 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 7.174 2.011 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.182 4.182 3 C -0.043 4.043 4 C -0.311 4.311 5 C 0.471 3.529 6 F -0.169 7.169 7 F -0.171 7.171 8 F -0.164 7.164 9 C -0.016 4.016 10 C -0.160 4.160 11 C 0.011 3.989 12 N -0.202 5.202 13 C 0.152 3.848 14 C -0.491 4.491 15 H 0.129 0.871 16 C -0.170 4.170 17 N -0.409 5.409 18 Si 0.774 3.226 19 H -0.158 1.158 20 H -0.204 1.204 21 H -0.194 1.194 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.154 0.846 26 H 0.139 0.861 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.584 5.614 1.829 6.445 hybrid contribution 0.197 -0.380 -0.204 0.474 sum -2.388 5.233 1.626 5.978 Atomic orbital electron populations 1.20477 0.89500 1.02328 1.01825 1.20124 0.96995 0.91117 1.09966 1.20536 0.91584 0.98336 0.93830 1.19038 0.95010 0.90115 1.26900 1.18136 0.76271 0.85452 0.73039 1.93165 1.94949 1.91878 1.36895 1.93123 1.46433 1.96122 1.81459 1.93124 1.74514 1.67538 1.81241 1.20408 0.98612 0.90198 0.92408 1.17116 0.92401 0.85793 1.20732 1.25585 0.90548 0.92479 0.90244 1.80906 1.13086 1.11487 1.14744 1.18701 0.88545 0.93556 0.84003 1.19908 1.12169 0.95283 1.21776 0.87098 1.26622 0.92365 1.04485 0.93521 1.69636 1.25249 1.37191 1.08831 0.85632 0.80918 0.76996 0.79102 1.15822 1.20364 1.19405 0.91410 0.91158 0.92191 0.84560 0.86122 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.61 9.52 71.23 0.68 -1.94 15 2 C -0.18 -6.91 5.94 -19.42 -0.12 -7.02 15 3 C -0.02 -0.85 8.96 22.19 0.20 -0.65 15 4 C -0.31 -11.38 5.46 -19.80 -0.11 -11.49 15 5 C 0.52 17.37 3.34 71.24 0.24 17.61 15 6 F -0.19 -6.05 17.30 44.97 0.78 -5.28 15 7 F -0.19 -6.37 16.40 44.97 0.74 -5.63 15 8 F -0.18 -5.72 16.39 44.97 0.74 -4.98 15 9 C 0.00 0.20 9.08 22.51 0.20 0.40 15 10 C -0.16 -7.09 5.61 -19.59 -0.11 -7.20 15 11 C 0.32 15.72 11.75 88.33 1.04 16.76 15 12 N -0.52 -26.35 18.51 19.00 0.35 -26.00 15 13 C 0.16 7.03 5.43 -19.86 -0.11 6.92 15 14 C -0.46 -20.84 7.41 23.39 0.17 -20.66 15 15 H 0.11 4.57 7.66 -2.91 -0.02 4.55 15 16 C 0.05 2.37 4.09 85.36 0.35 2.71 15 17 N -0.79 -38.35 11.25 21.88 0.25 -38.11 15 18 Si 0.95 36.57 29.62 68.60 2.03 38.60 15 19 H -0.24 -8.04 7.11 99.48 0.71 -7.34 15 20 H -0.28 -10.82 7.11 99.48 0.71 -10.12 15 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.07 1.83 8.08 -2.39 -0.02 1.81 15 24 H 0.06 1.97 7.08 -2.39 -0.02 1.95 15 25 H 0.14 4.01 7.53 -2.91 -0.02 3.99 15 26 H 0.12 4.52 7.55 -2.91 -0.02 4.50 15 27 H 0.29 13.64 8.30 -92.71 -0.77 12.88 15 Total: -1.00 -50.52 261.72 8.55 -41.97 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.23 Total: 3.99 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 2.44 Total: -4.56 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: 0.60 Total: -64.11 kcal Atomic # 9 Polarization: -18.14 SS G_CDS: 2.25 Total: -15.89 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -50.52 8.55 -41.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.961 kcal (2) G-P(sol) polarization free energy of solvation -50.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds