Wall clock time and date at job start Mon Mar 30 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47160 * 2 1 4 4 C 1.35297 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.39369 * 119.45050 * 0.02562 * 4 3 2 6 6 C 1.36553 * 120.18240 * 179.97438 * 5 4 3 7 7 F 1.35092 * 120.44623 * 180.02562 * 6 5 4 8 8 C 1.46450 * 119.10518 * 359.97438 * 6 5 4 9 9 C 1.39446 * 120.52083 * 180.02562 * 8 6 5 10 10 H 1.07993 * 119.99989 * 334.67008 * 9 8 6 11 11 C 1.46652 * 119.99963 * 154.66712 * 9 8 6 12 12 N 1.29456 * 119.99949 * 161.13688 * 11 9 8 13 13 Si 1.86798 * 120.00069 * 341.14454 * 11 9 8 14 14 H 1.48496 * 109.47414 * 94.26569 * 13 11 9 15 15 H 1.48498 * 109.47096 * 214.26679 * 13 11 9 16 16 H 1.48506 * 109.47161 * 334.26188 * 13 11 9 17 17 C 1.41796 * 118.95794 * 0.02562 * 8 6 5 18 18 C 1.35778 * 119.74262 * 359.73344 * 17 8 6 19 19 N 1.48015 * 119.54363 * 180.25096 * 18 17 8 20 20 O 1.31694 * 120.00432 * 0.26589 * 19 18 17 21 21 O 1.31702 * 119.99736 * 180.27216 * 19 18 17 22 22 H 1.08998 * 109.47230 * 59.99917 * 1 2 3 23 23 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47349 * 300.00119 * 1 2 3 25 25 H 1.09006 * 109.46743 * 119.99672 * 2 1 3 26 26 H 1.08997 * 109.46825 * 239.99305 * 2 1 3 27 27 H 1.08001 * 119.90902 * 359.95068 * 5 4 3 28 28 H 0.97003 * 119.99865 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.12972 * 179.97438 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3477 1.5245 0.0005 5 6 4.1860 0.4111 0.0005 6 6 5.5419 0.5726 0.0005 7 9 6.3594 -0.5028 0.0000 8 6 6.0979 1.9275 0.0000 9 6 7.4780 2.1266 -0.0005 10 1 8.1333 1.3672 0.3995 11 6 8.0396 3.3674 -0.5445 12 7 9.2434 3.7253 -0.2303 13 14 7.0180 4.4314 -1.6905 14 1 6.3299 5.4867 -0.9043 15 1 7.9044 5.0646 -2.6997 16 1 6.0073 3.5886 -2.3789 17 6 5.2107 3.0336 0.0000 18 6 3.8696 2.8215 -0.0049 19 7 2.9475 3.9794 -0.0105 20 8 3.4294 5.2050 -0.0159 21 8 1.6451 3.7839 -0.0099 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.7620 -0.5822 0.0009 28 1 9.6150 4.5458 -0.5903 29 1 5.6001 4.0409 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575697723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:18 Heat of formation + Delta-G solvation = -48.268163 kcal Electronic energy + Delta-G solvation = -18859.868341 eV Core-core repulsion = 15474.171244 eV Total energy + Delta-G solvation = -3385.697098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.04492 -39.69690 -37.88786 -36.60288 -34.07593 -33.49484 -31.71779 -30.71825 -30.24023 -25.65415 -25.00880 -23.65725 -21.57822 -20.90719 -18.52178 -18.18319 -17.38978 -16.74936 -15.96912 -15.92215 -15.70975 -15.00422 -14.68224 -14.55744 -14.07195 -13.70130 -13.22042 -12.84626 -12.54385 -12.45000 -12.28789 -11.70175 -11.25263 -11.11088 -11.06215 -10.83246 -10.47484 -10.30126 -10.17379 -10.11193 -9.85998 -9.61463 -8.60696 -8.02521 -7.65530 -4.92642 0.23706 1.94714 2.03127 2.09523 2.86038 2.90124 2.96260 3.56676 3.59735 3.70587 4.53291 4.88328 5.02155 5.09198 5.23391 5.38851 5.43131 5.69400 5.90301 5.93863 5.99153 6.14895 6.20615 6.34045 6.47786 6.79949 6.85365 7.08039 7.49989 7.70855 7.73226 7.92457 8.03144 9.27164 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.009078 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.174323 B = 3083.664591 C = 4180.650497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.289 6.289 4 C 0.054 3.946 5 C -0.183 4.183 6 C 0.055 3.945 7 F -0.136 7.136 8 C 0.048 3.952 9 C -0.393 4.393 10 H 0.108 0.892 11 C 0.081 3.919 12 N -0.736 5.736 13 Si 0.904 3.096 14 H -0.242 1.242 15 H -0.275 1.275 16 H -0.240 1.240 17 C -0.199 4.199 18 C 0.043 3.957 19 N -0.003 5.003 20 O -0.230 6.230 21 O -0.170 6.170 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.305 0.695 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -5.232 -1.212 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.202 6.202 4 C 0.006 3.994 5 C -0.203 4.203 6 C 0.034 3.966 7 F -0.115 7.115 8 C 0.044 3.956 9 C -0.417 4.417 10 H 0.126 0.874 11 C -0.151 4.151 12 N -0.354 5.354 13 Si 0.727 3.273 14 H -0.166 1.166 15 H -0.201 1.201 16 H -0.163 1.163 17 C -0.219 4.219 18 C -0.045 4.045 19 N 0.467 4.533 20 O -0.410 6.410 21 O -0.367 6.367 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.117 0.883 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.432 -5.408 -1.186 7.756 hybrid contribution -0.156 0.364 -0.381 0.550 sum -5.588 -5.044 -1.567 7.690 Atomic orbital electron populations 1.21717 0.93049 1.02025 1.03695 1.22703 0.95705 0.82999 1.00820 1.86140 1.17562 1.27624 1.88873 1.17617 0.83063 0.90015 1.08713 1.20329 0.92226 0.97634 1.10132 1.18584 0.86522 0.83099 1.08380 1.91377 1.72899 1.53332 1.93896 1.18210 0.93457 0.87713 0.96269 1.20603 0.90581 1.01001 1.29515 0.87393 1.27836 0.95066 0.96745 0.95429 1.68929 1.15248 1.20793 1.30429 0.86364 0.80175 0.80674 0.80121 1.16629 1.20142 1.16278 1.20178 0.88840 0.99971 1.12961 1.19125 0.88150 0.80342 1.16885 1.50515 1.03372 1.03916 0.95459 1.96206 1.81443 1.04448 1.58880 1.96202 0.92173 1.93583 1.54771 0.91528 0.91002 0.91522 0.92557 0.92572 0.84615 0.88251 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 15 2 C 0.05 0.75 5.44 37.16 0.20 0.95 15 3 O -0.29 -5.57 7.93 -40.03 -0.32 -5.88 15 4 C 0.05 1.13 6.71 -38.57 -0.26 0.87 15 5 C -0.18 -3.52 8.92 -39.77 -0.35 -3.88 15 6 C 0.06 1.17 7.47 -36.88 -0.28 0.90 15 7 F -0.14 -2.82 16.91 2.25 0.04 -2.78 15 8 C 0.05 1.12 5.42 -104.78 -0.57 0.55 15 9 C -0.39 -9.37 9.64 -35.74 -0.34 -9.72 15 10 H 0.11 2.65 7.98 -52.49 -0.42 2.23 15 11 C 0.08 1.85 5.59 -15.16 -0.08 1.77 15 12 N -0.74 -16.63 13.88 55.99 0.78 -15.86 15 13 Si 0.90 18.82 24.57 -169.99 -4.18 14.64 15 14 H -0.24 -5.13 6.69 56.52 0.38 -4.76 15 15 H -0.28 -5.33 7.11 56.52 0.40 -4.92 15 16 H -0.24 -5.23 6.85 56.52 0.39 -4.84 15 17 C -0.20 -4.69 6.77 -39.10 -0.26 -4.95 15 18 C 0.04 1.01 6.84 -80.24 -0.55 0.46 15 19 N 0.00 -0.06 4.98 33.82 0.17 0.10 15 20 O -0.23 -5.69 19.07 -31.56 -0.60 -6.30 15 21 O -0.17 -4.02 17.81 -39.32 -0.70 -4.72 15 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.06 0.72 7.62 -51.93 -0.40 0.32 15 26 H 0.06 0.72 7.62 -51.93 -0.40 0.32 15 27 H 0.14 2.14 6.21 -52.49 -0.33 1.82 15 28 H 0.30 6.06 8.27 -40.82 -0.34 5.73 15 29 H 0.14 3.33 3.71 -52.49 -0.19 3.14 15 LS Contribution 264.71 15.07 3.99 3.99 Total: -1.00 -26.11 264.71 -5.11 -31.22 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -2.17 Total: -0.08 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.12 Total: -14.34 kcal Atomic # 7 Polarization: -16.70 SS G_CDS: 0.95 Total: -15.75 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.62 Total: -16.90 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.18 Total: 14.64 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.11 -5.11 -31.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.049 kcal (2) G-P(sol) polarization free energy of solvation -26.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds