Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47160 * 2 1 4 4 C 1.35297 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.39369 * 119.45050 * 0.02562 * 4 3 2 6 6 C 1.36553 * 120.18240 * 179.97438 * 5 4 3 7 7 F 1.35092 * 120.44623 * 180.02562 * 6 5 4 8 8 C 1.46450 * 119.10518 * 359.97438 * 6 5 4 9 9 C 1.39446 * 120.52083 * 180.02562 * 8 6 5 10 10 H 1.07993 * 119.99989 * 334.67008 * 9 8 6 11 11 C 1.46652 * 119.99963 * 154.66712 * 9 8 6 12 12 N 1.29456 * 119.99949 * 161.13688 * 11 9 8 13 13 Si 1.86798 * 120.00069 * 341.14454 * 11 9 8 14 14 H 1.48496 * 109.47414 * 94.26569 * 13 11 9 15 15 H 1.48498 * 109.47096 * 214.26679 * 13 11 9 16 16 H 1.48506 * 109.47161 * 334.26188 * 13 11 9 17 17 C 1.41796 * 118.95794 * 0.02562 * 8 6 5 18 18 C 1.35778 * 119.74262 * 359.73344 * 17 8 6 19 19 N 1.48015 * 119.54363 * 180.25096 * 18 17 8 20 20 O 1.31694 * 120.00432 * 0.26589 * 19 18 17 21 21 O 1.31702 * 119.99736 * 180.27216 * 19 18 17 22 22 H 1.08998 * 109.47230 * 59.99917 * 1 2 3 23 23 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47349 * 300.00119 * 1 2 3 25 25 H 1.09006 * 109.46743 * 119.99672 * 2 1 3 26 26 H 1.08997 * 109.46825 * 239.99305 * 2 1 3 27 27 H 1.08001 * 119.90902 * 359.95068 * 5 4 3 28 28 H 0.97003 * 119.99865 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.12972 * 179.97438 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3477 1.5245 0.0005 5 6 4.1860 0.4111 0.0005 6 6 5.5419 0.5726 0.0005 7 9 6.3594 -0.5028 0.0000 8 6 6.0979 1.9275 0.0000 9 6 7.4780 2.1266 -0.0005 10 1 8.1333 1.3672 0.3995 11 6 8.0396 3.3674 -0.5445 12 7 9.2434 3.7253 -0.2303 13 14 7.0180 4.4314 -1.6905 14 1 6.3299 5.4867 -0.9043 15 1 7.9044 5.0646 -2.6997 16 1 6.0073 3.5886 -2.3789 17 6 5.2107 3.0336 0.0000 18 6 3.8696 2.8215 -0.0049 19 7 2.9475 3.9794 -0.0105 20 8 3.4294 5.2050 -0.0159 21 8 1.6451 3.7839 -0.0099 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.7620 -0.5822 0.0009 28 1 9.6150 4.5458 -0.5903 29 1 5.6001 4.0409 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575697723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = -62.353146 kcal Electronic energy + Delta-G solvation = -18860.479112 eV Core-core repulsion = 15474.171244 eV Total energy + Delta-G solvation = -3386.307869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.77668 -41.35773 -39.60116 -38.30117 -35.77585 -35.33790 -33.06192 -32.42310 -31.72186 -27.46152 -26.70130 -25.02759 -23.06801 -22.62038 -20.27505 -19.76081 -19.18815 -18.54301 -17.61393 -17.47908 -17.31766 -16.65109 -16.37002 -16.21692 -15.68911 -15.27572 -14.89781 -14.24629 -14.07804 -13.87082 -13.35021 -13.34301 -12.95449 -12.65817 -12.46710 -12.34556 -12.25106 -11.97540 -11.86819 -11.76352 -11.59645 -11.25744 -10.29748 -9.72774 -9.37382 -6.70037 -1.60672 0.25107 0.26355 0.31297 1.18639 1.21338 1.28574 1.90579 1.98557 2.15391 2.77191 3.15390 3.46461 3.72116 4.11800 4.16629 4.21245 4.23849 4.42003 4.49873 4.63889 4.72917 4.89903 5.01328 5.03977 5.12094 5.29933 5.39468 5.72655 5.89025 6.02937 6.21894 6.38864 7.62145 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.009078 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.174323 B = 3083.664591 C = 4180.650497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 O -0.303 6.303 4 C 0.091 3.909 5 C -0.175 4.175 6 C 0.073 3.927 7 F -0.129 7.129 8 C 0.039 3.961 9 C -0.427 4.427 10 H 0.092 0.908 11 C 0.067 3.933 12 N -0.758 5.758 13 Si 0.940 3.060 14 H -0.257 1.257 15 H -0.250 1.250 16 H -0.257 1.257 17 C -0.224 4.224 18 C 0.015 3.985 19 N -0.001 5.001 20 O -0.276 6.276 21 O -0.160 6.160 22 H 0.059 0.941 23 H 0.107 0.893 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.183 0.817 28 H 0.317 0.683 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -7.596 -1.573 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 O -0.216 6.216 4 C 0.041 3.959 5 C -0.194 4.194 6 C 0.052 3.948 7 F -0.107 7.107 8 C 0.035 3.965 9 C -0.452 4.452 10 H 0.110 0.890 11 C -0.164 4.164 12 N -0.377 5.377 13 Si 0.762 3.238 14 H -0.183 1.183 15 H -0.174 1.174 16 H -0.180 1.180 17 C -0.245 4.245 18 C -0.075 4.075 19 N 0.462 4.538 20 O -0.445 6.445 21 O -0.361 6.361 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.200 0.800 28 H 0.131 0.869 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.991 -7.694 -1.552 10.511 hybrid contribution 0.089 0.758 -0.231 0.797 sum -6.903 -6.936 -1.783 9.946 Atomic orbital electron populations 1.21775 0.91078 1.04178 1.03127 1.23272 0.97385 0.80445 1.02770 1.86175 1.16155 1.31646 1.87595 1.17879 0.84406 0.89439 1.04148 1.20683 0.90932 0.99172 1.08636 1.18789 0.87464 0.82575 1.05947 1.91406 1.72976 1.52767 1.93569 1.18335 0.93273 0.88646 0.96269 1.20544 0.90851 1.01678 1.32106 0.88998 1.28106 0.95486 0.96961 0.95809 1.68898 1.15699 1.21850 1.31282 0.85836 0.79220 0.79320 0.79427 1.18289 1.17439 1.18046 1.20003 0.89192 0.99646 1.15635 1.19419 0.88208 0.80952 1.18884 1.50619 1.03400 1.04152 0.95593 1.96205 1.81487 1.04954 1.61815 1.96156 0.92516 1.93537 1.53855 0.92146 0.87456 0.92124 0.90462 0.90505 0.79952 0.86926 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.28 71.98 0.74 -1.91 15 2 C 0.04 0.81 5.44 71.98 0.39 1.20 15 3 O -0.30 -10.60 7.93 -64.37 -0.51 -11.11 15 4 C 0.09 3.56 6.71 22.92 0.15 3.71 15 5 C -0.17 -6.00 8.92 22.15 0.20 -5.80 15 6 C 0.07 2.95 7.47 24.02 0.18 3.13 15 7 F -0.13 -4.97 16.91 44.97 0.76 -4.21 15 8 C 0.04 1.82 5.42 -19.97 -0.11 1.72 15 9 C -0.43 -20.77 9.64 24.76 0.24 -20.53 15 10 H 0.09 4.63 7.98 -2.91 -0.02 4.61 15 11 C 0.07 3.10 5.59 87.24 0.49 3.59 15 12 N -0.76 -34.74 13.88 23.23 0.32 -34.42 15 13 Si 0.94 39.46 24.57 68.60 1.69 41.14 15 14 H -0.26 -11.34 6.69 99.48 0.67 -10.68 15 15 H -0.25 -9.27 7.11 99.48 0.71 -8.57 15 16 H -0.26 -11.35 6.85 99.48 0.68 -10.67 15 17 C -0.22 -10.69 6.77 22.58 0.15 -10.53 15 18 C 0.01 0.68 6.84 36.19 0.25 0.93 15 19 N 0.00 -0.05 4.98 -46.92 -0.23 -0.28 15 20 O -0.28 -14.17 19.07 3.52 0.07 -14.11 15 21 O -0.16 -7.41 17.81 10.92 0.19 -7.21 15 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.11 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.06 1.19 8.14 -2.38 -0.02 1.17 15 25 H 0.08 1.51 7.62 -2.38 -0.02 1.49 15 26 H 0.08 1.51 7.62 -2.39 -0.02 1.49 15 27 H 0.18 4.58 6.21 -2.91 -0.02 4.56 15 28 H 0.32 12.69 8.27 -92.71 -0.77 11.93 15 29 H 0.13 6.33 3.71 -2.91 -0.01 6.32 15 Total: -1.00 -56.76 264.71 6.11 -50.65 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.14 Total: 4.04 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.68 Total: -24.50 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.09 Total: -34.70 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.25 Total: -32.43 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.76 Total: -4.21 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.69 Total: 41.14 kcal Total: -56.76 6.11 -50.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.701 kcal (2) G-P(sol) polarization free energy of solvation -56.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds