Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47029 * 2 1 4 4 C 1.35895 * 116.99673 * 179.97438 * 3 2 1 5 5 C 1.37962 * 119.89693 * 359.73135 * 4 3 2 6 6 C 1.41180 * 119.69160 * 179.77557 * 5 4 3 7 7 C 1.40356 * 120.24818 * 180.27105 * 6 5 4 8 8 H 1.07998 * 120.00100 * 205.42537 * 7 6 5 9 9 C 1.46521 * 119.99816 * 25.43270 * 7 6 5 10 10 N 1.29512 * 120.00277 * 12.24747 * 9 7 6 11 11 Si 1.86810 * 119.99739 * 192.25018 * 9 7 6 12 12 H 1.48504 * 109.47232 * 94.98798 * 11 9 7 13 13 H 1.48499 * 109.46852 * 214.98564 * 11 9 7 14 14 H 1.48493 * 109.47017 * 334.98716 * 11 9 7 15 15 C 1.41287 * 119.50077 * 0.49243 * 6 5 4 16 16 C 1.37671 * 119.78406 * 359.75881 * 15 6 5 17 17 F 1.35099 * 119.85214 * 180.02562 * 16 15 6 18 18 C 1.38952 * 120.29905 * 359.97438 * 16 15 6 19 19 N 1.48026 * 119.74244 * 179.97438 * 18 16 15 20 20 O 1.31702 * 119.99650 * 270.02298 * 19 18 16 21 21 O 1.31696 * 120.00110 * 90.02867 * 19 18 16 22 22 H 1.08994 * 109.47032 * 299.99911 * 1 2 3 23 23 H 1.09000 * 109.46960 * 60.00211 * 1 2 3 24 24 H 1.09000 * 109.46582 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46931 * 240.00351 * 2 1 3 26 26 H 1.08996 * 109.46889 * 120.00529 * 2 1 3 27 27 H 1.07998 * 120.15396 * 0.02562 * 5 4 3 28 28 H 0.97004 * 119.99836 * 180.02562 * 10 9 7 29 29 H 1.08002 * 120.11024 * 179.77582 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1920 0.4297 0.0067 6 6 5.5910 0.6196 0.0024 7 6 6.4547 -0.4868 0.0028 8 1 7.4539 -0.3916 0.4014 9 6 6.0007 -1.7708 -0.5377 10 7 4.9052 -1.8328 -1.2257 11 14 7.0022 -3.3183 -0.2345 12 1 6.4651 -4.0309 0.9526 13 1 6.9173 -4.2037 -1.4236 14 1 8.4202 -2.9505 0.0087 15 6 6.1150 1.9317 0.0025 16 6 5.2590 3.0099 0.0016 17 9 5.7586 4.2651 0.0012 18 6 3.8835 2.8130 0.0002 19 7 2.9744 3.9812 -0.0001 20 8 2.5693 4.5006 1.1404 21 8 2.5706 4.5011 -1.1407 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7801 -0.5687 0.0106 28 1 4.6045 -2.6830 -1.5832 29 1 7.1836 2.0883 0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575697869.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = -71.330113 kcal Electronic energy + Delta-G solvation = -18793.668454 eV Core-core repulsion = 15406.971314 eV Total energy + Delta-G solvation = -3386.697139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.22334 -41.17980 -39.65482 -38.33121 -35.82352 -35.45863 -33.14364 -32.09557 -30.41549 -29.01822 -26.00939 -24.92825 -23.09057 -22.61308 -20.42236 -19.55993 -19.36726 -18.34615 -18.12429 -17.21885 -17.16120 -16.87950 -16.72939 -16.16107 -15.65779 -15.14734 -14.27528 -14.19483 -14.03302 -13.52806 -13.30506 -13.19981 -13.00934 -12.71814 -12.58019 -12.38316 -12.25447 -12.07885 -11.87429 -11.84307 -11.68912 -11.29162 -10.08979 -9.44377 -9.10861 -6.92305 -1.24651 0.12211 0.34015 0.54401 1.37610 1.41552 1.56609 2.00124 2.07542 2.19989 3.06362 3.26684 3.97782 3.99457 4.03451 4.16324 4.30708 4.46185 4.47627 4.53776 4.73381 4.80255 4.85610 5.08160 5.12176 5.27479 5.53294 5.59893 5.62420 5.96659 6.20198 6.31209 6.48557 7.76696 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.008129 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.331256 B = 3443.705684 C = 4608.202084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.346 6.346 4 C 0.199 3.801 5 C -0.273 4.273 6 C 0.114 3.886 7 C -0.402 4.402 8 H 0.117 0.883 9 C 0.034 3.966 10 N -0.749 5.749 11 Si 1.006 2.994 12 H -0.254 1.254 13 H -0.261 1.261 14 H -0.248 1.248 15 C -0.259 4.259 16 C 0.179 3.821 17 F -0.149 7.149 18 C -0.253 4.253 19 N 0.013 4.987 20 O -0.177 6.177 21 O -0.190 6.190 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.316 0.684 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -8.854 1.101 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.151 3.849 5 C -0.293 4.293 6 C 0.110 3.890 7 C -0.425 4.425 8 H 0.135 0.865 9 C -0.194 4.194 10 N -0.368 5.368 11 Si 0.823 3.177 12 H -0.178 1.178 13 H -0.185 1.185 14 H -0.171 1.171 15 C -0.279 4.279 16 C 0.158 3.842 17 F -0.127 7.127 18 C -0.337 4.337 19 N 0.507 4.493 20 O -0.383 6.383 21 O -0.392 6.392 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.130 0.870 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.129 0.871 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.237 -9.396 0.916 9.444 hybrid contribution -0.029 0.427 -0.125 0.446 sum 0.209 -8.969 0.790 9.007 Atomic orbital electron populations 1.21815 0.90491 1.04593 1.03035 1.23058 0.97100 0.79775 1.02226 1.85947 1.18677 1.32827 1.88603 1.17872 0.83178 0.89810 0.94007 1.21501 0.93424 0.96366 1.17988 1.17541 0.92184 0.91788 0.87484 1.21693 1.00614 0.92203 1.27956 0.86513 1.28662 0.95842 1.04100 0.90840 1.69063 1.19264 1.31686 1.16741 0.84800 0.79351 0.73895 0.79667 1.17804 1.18512 1.17055 1.21163 0.98938 0.90222 1.17592 1.16671 0.87335 0.79636 1.00559 1.91423 1.87788 1.39413 1.94101 1.18997 0.86490 0.80879 1.47349 1.50249 0.97666 1.00581 1.00803 1.96123 1.60908 1.65100 1.16218 1.96136 1.61508 1.65375 1.16215 0.91848 0.92095 0.87033 0.91500 0.91537 0.82591 0.87052 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 10.28 71.98 0.74 -2.94 15 2 C 0.05 1.80 5.46 71.98 0.39 2.19 15 3 O -0.35 -15.71 9.88 -92.37 -0.91 -16.63 15 4 C 0.20 9.74 6.68 22.45 0.15 9.89 15 5 C -0.27 -12.61 7.74 22.93 0.18 -12.43 15 6 C 0.11 5.21 5.61 -21.29 -0.12 5.09 15 7 C -0.40 -16.36 9.32 24.95 0.23 -16.13 15 8 H 0.12 4.29 7.96 -2.91 -0.02 4.27 15 9 C 0.03 1.25 5.41 87.20 0.47 1.72 15 10 N -0.75 -28.54 10.84 23.21 0.25 -28.29 15 11 Si 1.01 26.25 29.66 68.60 2.03 28.29 15 12 H -0.25 -6.46 7.11 99.48 0.71 -5.76 15 13 H -0.26 -6.52 7.11 99.48 0.71 -5.81 15 14 H -0.25 -6.34 7.11 99.48 0.71 -5.64 15 15 C -0.26 -11.69 9.78 22.89 0.22 -11.47 15 16 C 0.18 8.76 7.28 22.31 0.16 8.92 15 17 F -0.15 -7.09 17.08 44.97 0.77 -6.32 15 18 C -0.25 -13.16 6.32 36.79 0.23 -12.93 15 19 N 0.01 0.71 4.43 -45.47 -0.20 0.50 15 20 O -0.18 -9.24 19.97 3.51 0.07 -9.17 15 21 O -0.19 -10.06 19.97 3.52 0.07 -9.99 15 22 H 0.06 1.63 8.14 -2.39 -0.02 1.62 15 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 24 H 0.11 2.06 8.14 -2.39 -0.02 2.05 15 25 H 0.07 2.30 7.67 -2.39 -0.02 2.28 15 26 H 0.07 2.16 7.64 -2.39 -0.02 2.14 15 27 H 0.16 6.80 4.26 -2.91 -0.01 6.79 15 28 H 0.32 10.21 8.27 -92.71 -0.77 9.44 15 29 H 0.15 5.87 8.06 -2.91 -0.02 5.84 15 Total: -1.00 -56.82 275.31 5.94 -50.88 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.20 Total: 18.80 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 2.66 Total: -28.08 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.05 Total: -27.78 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.77 Total: -35.78 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.77 Total: -6.32 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: 2.03 Total: 28.29 kcal Total: -56.82 5.94 -50.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697869.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.455 kcal (2) G-P(sol) polarization free energy of solvation -56.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds