Wall clock time and date at job start Mon Mar 30 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47238 * 2 1 4 4 C 1.35279 * 116.99883 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.59687 * 0.28731 * 4 3 2 6 6 C 1.38213 * 120.15527 * 180.25825 * 5 4 3 7 7 N 1.48018 * 119.28464 * 179.74783 * 6 5 4 8 8 O 1.31703 * 119.99966 * 179.97438 * 7 6 5 9 9 O 1.31702 * 120.00429 * 359.97438 * 7 6 5 10 10 C 1.38748 * 121.42684 * 359.73150 * 6 5 4 11 11 C 1.36433 * 121.22514 * 359.97372 * 10 6 5 12 12 F 1.35098 * 120.14392 * 180.02562 * 11 10 6 13 13 C 1.41990 * 119.71654 * 0.02562 * 11 10 6 14 14 C 1.39393 * 120.66835 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00119 * 145.73866 * 14 13 11 16 16 C 1.46714 * 120.00034 * 325.73965 * 14 13 11 17 17 N 1.29431 * 120.00200 * 151.44055 * 16 14 13 18 18 Si 1.86800 * 119.99771 * 331.16677 * 16 14 13 19 19 H 1.48500 * 109.47511 * 268.24544 * 18 16 14 20 20 H 1.48508 * 109.47246 * 28.25070 * 18 16 14 21 21 H 1.48506 * 109.47178 * 148.24686 * 18 16 14 22 22 H 1.09005 * 109.47192 * 300.00268 * 1 2 3 23 23 H 1.09001 * 109.47312 * 59.99877 * 1 2 3 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46755 * 240.00369 * 2 1 3 26 26 H 1.08992 * 109.47358 * 120.00359 * 2 1 3 27 27 H 1.08004 * 119.91967 * 359.97438 * 5 4 3 28 28 H 1.08006 * 119.39120 * 179.97438 * 10 6 5 29 29 H 0.96997 * 119.99883 * 179.72471 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3475 1.5245 0.0005 5 6 4.2028 0.4346 -0.0049 6 6 5.5715 0.6262 0.0011 7 7 6.4675 -0.5520 0.0008 8 8 7.7740 -0.3857 0.0059 9 8 5.9583 -1.7666 -0.0047 10 6 6.1239 1.8990 0.0070 11 6 5.3352 3.0123 0.0067 12 9 5.8963 4.2412 0.0120 13 6 3.9221 2.8738 0.0006 14 6 3.0975 3.9976 0.0007 15 1 2.1569 3.9773 -0.5297 16 6 3.5074 5.2082 0.7212 17 7 3.1019 6.3695 0.3186 18 14 4.6083 5.0727 2.2243 19 1 3.7690 4.9750 3.4455 20 1 5.4571 3.8596 2.1085 21 1 5.4741 6.2759 2.3137 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.7989 -0.5670 -0.0092 28 1 7.1981 2.0106 0.0120 29 1 3.3697 7.1695 0.7973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575697945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:57 Heat of formation + Delta-G solvation = -52.318040 kcal Electronic energy + Delta-G solvation = -18781.645245 eV Core-core repulsion = 15395.772531 eV Total energy + Delta-G solvation = -3385.872714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.25633 -39.29350 -37.68382 -36.11145 -34.63433 -32.96979 -31.84643 -30.97069 -29.04386 -27.14267 -24.14191 -23.24815 -21.20991 -21.13530 -18.85549 -18.13850 -16.94136 -16.42485 -15.88296 -15.68364 -15.52846 -15.13428 -15.01925 -14.49936 -14.42518 -13.60797 -13.42538 -12.79865 -12.57827 -12.35220 -12.07167 -11.98279 -11.41833 -11.14734 -10.92813 -10.70859 -10.38687 -10.27886 -10.00815 -9.93977 -9.75539 -9.51874 -8.49763 -8.14600 -7.89817 -5.31508 0.50703 2.03165 2.16094 2.61156 2.66107 2.73565 2.78198 3.36834 3.55177 3.60679 4.31640 5.05905 5.16199 5.28816 5.37213 5.48567 5.54536 5.74793 5.77944 5.97061 5.98042 6.06083 6.22693 6.38312 6.64209 6.77783 6.84060 7.10930 7.26015 7.41962 7.53075 8.10474 8.28956 8.70754 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.010261 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.246001 B = 2728.237738 C = 4148.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.300 6.300 4 C 0.056 3.944 5 C -0.134 4.134 6 C -0.102 4.102 7 N 0.046 4.954 8 O -0.306 6.306 9 O -0.306 6.306 10 C -0.044 4.044 11 C -0.012 4.012 12 F -0.137 7.137 13 C 0.039 3.961 14 C -0.276 4.276 15 H 0.126 0.874 16 C 0.060 3.940 17 N -0.689 5.689 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.232 1.232 21 H -0.261 1.261 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 1.749 1.938 6.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.214 6.214 4 C 0.009 3.991 5 C -0.155 4.155 6 C -0.203 4.203 7 N 0.473 4.527 8 O -0.464 6.464 9 O -0.464 6.464 10 C -0.065 4.065 11 C -0.035 4.035 12 F -0.116 7.116 13 C 0.034 3.966 14 C -0.299 4.299 15 H 0.143 0.857 16 C -0.178 4.178 17 N -0.305 5.305 18 Si 0.763 3.237 19 H -0.198 1.198 20 H -0.155 1.155 21 H -0.185 1.185 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.408 2.417 1.875 7.100 hybrid contribution 0.817 -0.204 0.383 0.926 sum -5.590 2.212 2.258 6.422 Atomic orbital electron populations 1.21736 0.93264 1.02255 1.03293 1.22700 0.95302 0.82865 1.01359 1.85821 1.18430 1.27784 1.89334 1.19349 0.81692 0.91144 1.06945 1.20186 0.90999 0.98515 1.05776 1.18478 0.87775 0.82337 1.31729 1.49854 1.02537 1.03304 0.97043 1.96115 0.92051 1.94377 1.63891 1.96098 1.79764 1.06649 1.63912 1.19816 1.00552 0.89572 0.96565 1.16272 0.89691 0.78951 1.18539 1.91098 1.84918 1.40582 1.95046 1.18054 0.90187 0.90561 0.97824 1.21493 1.03829 0.90874 1.13661 0.85663 1.28463 0.94914 0.93598 1.00782 1.68944 1.27045 1.00743 1.33748 0.85753 0.79298 0.82398 0.76203 1.19803 1.15498 1.18515 0.91676 0.91726 0.90860 0.92389 0.92339 0.84914 0.84812 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 15 2 C 0.05 0.78 5.47 37.16 0.20 0.98 15 3 O -0.30 -5.57 9.72 -17.53 -0.17 -5.74 15 4 C 0.06 1.16 6.91 -36.08 -0.25 0.91 15 5 C -0.13 -2.87 8.55 -39.48 -0.34 -3.21 15 6 C -0.10 -2.40 6.88 -79.77 -0.55 -2.94 15 7 N 0.05 1.17 4.98 34.05 0.17 1.34 15 8 O -0.31 -8.07 19.07 -31.57 -0.60 -8.67 15 9 O -0.31 -7.95 19.08 -31.57 -0.60 -8.55 15 10 C -0.04 -0.99 9.42 -40.04 -0.38 -1.37 15 11 C -0.01 -0.27 5.10 -38.80 -0.20 -0.47 15 12 F -0.14 -2.89 12.68 2.25 0.03 -2.86 15 13 C 0.04 0.83 5.13 -104.64 -0.54 0.29 15 14 C -0.28 -5.78 9.36 -35.73 -0.33 -6.12 15 15 H 0.13 2.63 8.05 -52.48 -0.42 2.21 15 16 C 0.06 1.19 4.92 -15.14 -0.07 1.11 15 17 N -0.69 -13.34 13.88 56.00 0.78 -12.56 15 18 Si 0.94 16.98 25.52 -169.99 -4.34 12.64 15 19 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 20 H -0.23 -4.55 5.28 56.52 0.30 -4.25 15 21 H -0.26 -4.43 7.11 56.52 0.40 -4.02 15 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.06 0.82 7.67 -51.93 -0.40 0.42 15 26 H 0.06 0.83 7.69 -51.93 -0.40 0.43 15 27 H 0.13 2.67 5.80 -52.48 -0.30 2.36 15 28 H 0.13 2.87 7.49 -52.48 -0.39 2.48 15 29 H 0.32 5.25 8.26 -40.82 -0.34 4.91 15 LS Contribution 265.83 15.07 4.01 4.01 Total: -1.00 -26.23 265.83 -5.22 -31.45 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.42 Total: 1.05 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.07 Total: -12.11 kcal Atomic # 7 Polarization: -12.16 SS G_CDS: 0.95 Total: -11.22 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.37 Total: -22.96 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.03 Total: -2.86 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -4.34 Total: 12.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.23 -5.22 -31.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.863 kcal (2) G-P(sol) polarization free energy of solvation -26.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds