Wall clock time and date at job start Mon Mar 30 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47238 * 2 1 4 4 C 1.35279 * 116.99883 * 179.97438 * 3 2 1 5 5 C 1.38539 * 120.59687 * 0.28731 * 4 3 2 6 6 C 1.38213 * 120.15527 * 180.25825 * 5 4 3 7 7 N 1.48018 * 119.28464 * 179.74783 * 6 5 4 8 8 O 1.31703 * 119.99966 * 179.97438 * 7 6 5 9 9 O 1.31702 * 120.00429 * 359.97438 * 7 6 5 10 10 C 1.38748 * 121.42684 * 359.73150 * 6 5 4 11 11 C 1.36433 * 121.22514 * 359.97372 * 10 6 5 12 12 F 1.35098 * 120.14392 * 180.02562 * 11 10 6 13 13 C 1.41990 * 119.71654 * 0.02562 * 11 10 6 14 14 C 1.39393 * 120.66835 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00119 * 145.73866 * 14 13 11 16 16 C 1.46714 * 120.00034 * 325.73965 * 14 13 11 17 17 N 1.29431 * 120.00200 * 151.44055 * 16 14 13 18 18 Si 1.86800 * 119.99771 * 331.16677 * 16 14 13 19 19 H 1.48500 * 109.47511 * 268.24544 * 18 16 14 20 20 H 1.48508 * 109.47246 * 28.25070 * 18 16 14 21 21 H 1.48506 * 109.47178 * 148.24686 * 18 16 14 22 22 H 1.09005 * 109.47192 * 300.00268 * 1 2 3 23 23 H 1.09001 * 109.47312 * 59.99877 * 1 2 3 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46755 * 240.00369 * 2 1 3 26 26 H 1.08992 * 109.47358 * 120.00359 * 2 1 3 27 27 H 1.08004 * 119.91967 * 359.97438 * 5 4 3 28 28 H 1.08006 * 119.39120 * 179.97438 * 10 6 5 29 29 H 0.96997 * 119.99883 * 179.72471 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3475 1.5245 0.0005 5 6 4.2028 0.4346 -0.0049 6 6 5.5715 0.6262 0.0011 7 7 6.4675 -0.5520 0.0008 8 8 7.7740 -0.3857 0.0059 9 8 5.9583 -1.7666 -0.0047 10 6 6.1239 1.8990 0.0070 11 6 5.3352 3.0123 0.0067 12 9 5.8963 4.2412 0.0120 13 6 3.9221 2.8738 0.0006 14 6 3.0975 3.9976 0.0007 15 1 2.1569 3.9773 -0.5297 16 6 3.5074 5.2082 0.7212 17 7 3.1019 6.3695 0.3186 18 14 4.6083 5.0727 2.2243 19 1 3.7690 4.9750 3.4455 20 1 5.4571 3.8596 2.1085 21 1 5.4741 6.2759 2.3137 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.7989 -0.5670 -0.0092 28 1 7.1981 2.0106 0.0120 29 1 3.3697 7.1695 0.7973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575697945.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:57 Heat of formation + Delta-G solvation = -67.232330 kcal Electronic energy + Delta-G solvation = -18782.291977 eV Core-core repulsion = 15395.772531 eV Total energy + Delta-G solvation = -3386.519446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.02974 -40.88250 -39.29134 -37.75909 -36.34581 -34.67670 -33.39429 -32.31859 -30.67444 -28.89170 -25.77011 -24.66513 -22.86720 -22.66145 -20.56360 -19.77203 -18.62561 -18.08251 -17.48556 -17.22171 -16.97886 -16.79324 -16.67897 -16.21597 -16.12340 -15.12306 -15.04123 -14.17888 -13.97144 -13.67541 -13.53364 -13.35263 -12.85781 -12.71310 -12.46158 -12.08306 -11.94703 -11.70779 -11.61578 -11.50762 -11.50581 -11.40229 -10.23556 -9.80962 -9.57573 -7.06791 -1.36861 0.32308 0.50355 1.01911 1.10147 1.28892 1.31945 1.89152 1.97604 2.13917 2.57864 3.40146 3.65269 3.86990 4.10724 4.11502 4.17235 4.24457 4.43173 4.47694 4.61812 4.86959 4.96493 5.01938 5.07443 5.12735 5.27707 5.38176 5.52915 5.61986 5.84034 6.49744 6.58809 7.09695 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.010261 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.246001 B = 2728.237738 C = 4148.791352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 O -0.304 6.304 4 C 0.091 3.909 5 C -0.162 4.162 6 C -0.091 4.091 7 N 0.047 4.953 8 O -0.394 6.394 9 O -0.381 6.381 10 C -0.063 4.063 11 C 0.014 3.986 12 F -0.130 7.130 13 C -0.003 4.003 14 C -0.204 4.204 15 H 0.137 0.863 16 C 0.034 3.966 17 N -0.671 5.671 18 Si 0.969 3.031 19 H -0.256 1.256 20 H -0.260 1.260 21 H -0.238 1.238 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 5.827 2.445 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 O -0.217 6.217 4 C 0.042 3.958 5 C -0.183 4.183 6 C -0.201 4.201 7 N 0.441 4.559 8 O -0.528 6.528 9 O -0.519 6.519 10 C -0.084 4.084 11 C -0.009 4.009 12 F -0.109 7.109 13 C -0.008 4.008 14 C -0.227 4.227 15 H 0.155 0.845 16 C -0.205 4.205 17 N -0.288 5.288 18 Si 0.788 3.212 19 H -0.182 1.182 20 H -0.184 1.184 21 H -0.161 1.161 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.748 6.304 2.377 11.850 hybrid contribution 1.185 -0.476 0.231 1.298 sum -8.563 5.829 2.608 10.681 Atomic orbital electron populations 1.21768 0.90291 1.04178 1.03581 1.23101 0.97530 0.80904 1.01810 1.85817 1.16809 1.30568 1.88506 1.19326 0.82605 0.90418 1.03497 1.20183 0.90302 0.99254 1.08553 1.18827 0.88465 0.82182 1.30581 1.49813 1.02218 1.03347 1.00486 1.96036 0.93210 1.94409 1.69181 1.96011 1.79661 1.07721 1.68469 1.19868 1.00824 0.89650 0.98026 1.16298 0.89810 0.78847 1.15988 1.91122 1.84980 1.40035 1.94804 1.18176 0.90142 0.91275 1.01238 1.22125 1.02753 0.90595 1.07199 0.84520 1.28838 0.96182 0.93368 1.02152 1.68843 1.24506 1.01457 1.33974 0.85380 0.78513 0.82176 0.75152 1.18165 1.18438 1.16070 0.91331 0.91395 0.88209 0.92053 0.91983 0.84347 0.84903 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 10.28 71.98 0.74 -1.96 15 2 C 0.04 1.11 5.47 71.98 0.39 1.50 15 3 O -0.30 -10.31 9.72 -85.64 -0.83 -11.15 15 4 C 0.09 3.57 6.91 24.54 0.17 3.74 15 5 C -0.16 -7.03 8.55 22.34 0.19 -6.84 15 6 C -0.09 -4.45 6.88 36.49 0.25 -4.20 15 7 N 0.05 2.64 4.98 -46.18 -0.23 2.41 15 8 O -0.39 -23.17 19.07 3.51 0.07 -23.10 15 9 O -0.38 -21.97 19.08 3.51 0.07 -21.90 15 10 C -0.06 -2.87 9.42 21.97 0.21 -2.66 15 11 C 0.01 0.57 5.10 22.78 0.12 0.69 15 12 F -0.13 -5.09 12.68 44.97 0.57 -4.52 15 13 C 0.00 -0.14 5.13 -19.87 -0.10 -0.24 15 14 C -0.20 -7.44 9.36 24.76 0.23 -7.21 15 15 H 0.14 4.84 8.05 -2.91 -0.02 4.82 15 16 C 0.03 1.14 4.92 87.26 0.43 1.57 15 17 N -0.67 -21.63 13.88 23.25 0.32 -21.30 15 18 Si 0.97 30.04 25.52 68.60 1.75 31.80 15 19 H -0.26 -7.46 7.11 99.48 0.71 -6.76 15 20 H -0.26 -9.45 5.28 99.48 0.53 -8.92 15 21 H -0.24 -6.63 7.11 99.48 0.71 -5.92 15 22 H 0.07 1.27 8.14 -2.38 -0.02 1.26 15 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.06 1.64 7.67 -2.38 -0.02 1.63 15 26 H 0.06 1.66 7.69 -2.39 -0.02 1.64 15 27 H 0.14 5.76 5.80 -2.91 -0.02 5.74 15 28 H 0.13 6.00 7.49 -2.91 -0.02 5.97 15 29 H 0.34 8.99 8.26 -92.71 -0.77 8.22 15 Total: -1.00 -58.42 265.83 5.36 -53.06 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.02 Total: 10.32 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 2.63 Total: -15.62 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.09 Total: -18.89 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.70 Total: -56.15 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.57 Total: -4.52 kcal Atomic # 14 Polarization: 30.04 SS G_CDS: 1.75 Total: 31.80 kcal Total: -58.42 5.36 -53.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697945.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.170 kcal (2) G-P(sol) polarization free energy of solvation -58.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds