Wall clock time and date at job start Mon Mar 30 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47048 * 2 1 4 4 C 1.35260 * 117.00194 * 179.97438 * 3 2 1 5 5 C 1.38803 * 120.58230 * 359.97438 * 4 3 2 6 6 C 1.37949 * 120.06697 * 179.76639 * 5 4 3 7 7 N 1.48016 * 119.33353 * 180.24959 * 6 5 4 8 8 O 1.31705 * 120.00222 * 0.26105 * 7 6 5 9 9 O 1.31706 * 120.00252 * 180.26422 * 7 6 5 10 10 C 1.39338 * 121.33412 * 0.51840 * 6 5 4 11 11 F 1.35092 * 119.39539 * 179.75369 * 10 6 5 12 12 C 1.36133 * 121.21138 * 359.47418 * 10 6 5 13 13 C 1.41590 * 119.81023 * 0.25584 * 12 10 6 14 14 C 1.39638 * 120.62422 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00002 * 154.82836 * 14 13 12 16 16 C 1.46643 * 120.00094 * 334.82562 * 14 13 12 17 17 N 1.29473 * 119.99942 * 161.19592 * 16 14 13 18 18 Si 1.86790 * 120.00094 * 341.19414 * 16 14 13 19 19 H 1.48506 * 109.47304 * 94.21924 * 18 16 14 20 20 H 1.48502 * 109.47202 * 214.21808 * 18 16 14 21 21 H 1.48504 * 109.47427 * 334.21815 * 18 16 14 22 22 H 1.08995 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47403 * 300.00480 * 1 2 3 24 24 H 1.08999 * 109.46705 * 60.00225 * 1 2 3 25 25 H 1.08997 * 109.47403 * 239.99520 * 2 1 3 26 26 H 1.08999 * 109.46705 * 119.99775 * 2 1 3 27 27 H 1.07994 * 119.96306 * 0.02562 * 5 4 3 28 28 H 1.07991 * 120.09570 * 180.27991 * 12 10 6 29 29 H 0.96996 * 119.99901 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3473 1.5245 0.0005 5 6 4.2040 0.4325 0.0016 6 6 5.5699 0.6256 -0.0027 7 7 6.4685 -0.5506 -0.0071 8 8 5.9620 -1.7664 -0.0121 9 8 7.7746 -0.3815 -0.0060 10 6 6.1208 1.9054 0.0026 11 9 7.4640 2.0491 0.0031 12 6 5.3303 3.0137 0.0015 13 6 3.9213 2.8733 0.0004 14 6 3.0944 3.9985 -0.0012 15 1 2.0928 3.9320 -0.3998 16 6 3.5858 5.2704 0.5384 17 7 2.9957 6.3788 0.2226 18 14 5.0631 5.2916 1.6813 19 1 6.2964 5.5383 0.8917 20 1 4.8953 6.3710 2.6873 21 1 5.1722 3.9824 2.3737 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8008 -0.5694 0.0016 28 1 5.7765 3.9971 0.0011 29 1 3.3210 7.2201 0.5792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575697966.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:59 Heat of formation + Delta-G solvation = -59.925330 kcal Electronic energy + Delta-G solvation = -18737.872117 eV Core-core repulsion = 15351.669526 eV Total energy + Delta-G solvation = -3386.202591 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.25758 -39.31417 -37.58207 -36.42338 -34.59022 -32.92191 -31.77638 -31.25852 -28.82230 -27.18802 -24.15623 -23.33478 -21.60472 -21.03909 -18.70053 -18.13757 -16.98590 -16.53845 -16.09520 -15.69798 -15.49441 -15.17068 -15.09393 -14.18750 -14.14387 -13.64283 -13.38900 -12.86839 -12.74333 -12.40017 -12.16617 -11.76878 -11.73104 -11.33115 -11.00581 -10.74319 -10.54232 -10.19180 -10.03912 -9.94759 -9.63837 -9.48391 -8.76503 -8.19307 -7.77262 -5.44844 0.55875 2.03751 2.09302 2.51311 2.63576 2.67511 2.71973 3.25680 3.48887 3.65632 4.36606 4.87449 5.14039 5.16417 5.28768 5.45384 5.48215 5.67184 5.90689 5.97607 5.98208 6.07443 6.21804 6.32430 6.63096 6.65651 6.82104 7.06429 7.22332 7.46322 7.50933 8.10179 8.26528 8.68125 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.010728 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.159007 B = 2609.259948 C = 4310.236483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.300 6.300 4 C 0.047 3.953 5 C -0.126 4.126 6 C -0.150 4.150 7 N 0.045 4.955 8 O -0.306 6.306 9 O -0.289 6.289 10 C 0.211 3.789 11 F -0.127 7.127 12 C -0.282 4.282 13 C 0.083 3.917 14 C -0.276 4.276 15 H 0.124 0.876 16 C 0.060 3.940 17 N -0.695 5.695 18 Si 0.924 3.076 19 H -0.249 1.249 20 H -0.271 1.271 21 H -0.229 1.229 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 2.514 1.552 6.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.214 6.214 4 C 0.000 4.000 5 C -0.147 4.147 6 C -0.252 4.252 7 N 0.474 4.526 8 O -0.464 6.464 9 O -0.450 6.450 10 C 0.190 3.810 11 F -0.105 7.105 12 C -0.303 4.303 13 C 0.078 3.922 14 C -0.299 4.299 15 H 0.141 0.859 16 C -0.177 4.177 17 N -0.311 5.311 18 Si 0.746 3.254 19 H -0.174 1.174 20 H -0.197 1.197 21 H -0.151 1.151 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.328 3.132 1.521 7.223 hybrid contribution 1.070 -0.374 0.291 1.171 sum -5.258 2.758 1.812 6.208 Atomic orbital electron populations 1.21734 0.93264 1.02248 1.03289 1.22700 0.95331 0.82949 1.01332 1.85826 1.18599 1.27746 1.89235 1.19808 0.81590 0.91886 1.06723 1.19988 0.90146 0.98676 1.05856 1.19051 0.88936 0.81352 1.35839 1.49774 1.02669 1.03140 0.97000 1.96097 1.80021 1.06260 1.64013 1.96170 0.91596 1.94307 1.62976 1.16665 0.76874 0.91617 0.95888 1.91528 1.29653 1.96538 1.92799 1.20323 0.92547 0.96448 1.21026 1.17874 0.90565 0.89619 0.94141 1.21578 1.01210 0.89309 1.17774 0.85859 1.28289 0.98965 0.94002 0.96463 1.68909 1.33845 1.00844 1.27544 0.86023 0.78318 0.81693 0.79372 1.17421 1.19681 1.15092 0.90886 0.91688 0.91709 0.92402 0.92380 0.84587 0.84837 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 15 2 C 0.05 0.77 5.47 37.16 0.20 0.97 15 3 O -0.30 -5.56 9.62 -17.47 -0.17 -5.73 15 4 C 0.05 0.98 6.91 -36.01 -0.25 0.73 15 5 C -0.13 -2.74 8.55 -39.48 -0.34 -3.08 15 6 C -0.15 -3.63 6.90 -79.65 -0.55 -4.18 15 7 N 0.04 1.19 4.98 34.11 0.17 1.36 15 8 O -0.31 -8.12 19.08 -31.57 -0.60 -8.72 15 9 O -0.29 -7.97 17.96 -31.57 -0.57 -8.54 15 10 C 0.21 4.92 7.17 -39.93 -0.29 4.63 15 11 F -0.13 -3.00 15.24 2.25 0.03 -2.97 15 12 C -0.28 -6.01 7.22 -39.06 -0.28 -6.29 15 13 C 0.08 1.74 5.43 -104.73 -0.57 1.17 15 14 C -0.28 -5.56 9.60 -35.67 -0.34 -5.91 15 15 H 0.12 2.53 7.91 -52.48 -0.41 2.11 15 16 C 0.06 1.11 5.59 -15.16 -0.08 1.03 15 17 N -0.70 -12.77 13.89 55.99 0.78 -11.99 15 18 Si 0.92 15.63 24.57 -169.99 -4.18 11.45 15 19 H -0.25 -4.16 6.69 56.52 0.38 -3.78 15 20 H -0.27 -4.23 7.11 56.52 0.40 -3.83 15 21 H -0.23 -4.19 6.84 56.52 0.39 -3.80 15 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.06 0.83 7.68 -51.93 -0.40 0.43 15 26 H 0.06 0.83 7.68 -51.93 -0.40 0.43 15 27 H 0.14 2.77 5.81 -52.49 -0.30 2.47 15 28 H 0.13 2.64 4.25 -52.49 -0.22 2.41 15 29 H 0.32 4.95 8.27 -40.82 -0.34 4.61 15 LS Contribution 265.12 15.07 4.00 4.00 Total: -1.00 -26.66 265.12 -4.83 -31.49 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.18 Total: 1.88 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.11 Total: -12.23 kcal Atomic # 7 Polarization: -11.58 SS G_CDS: 0.95 Total: -10.63 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.34 Total: -22.99 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.03 Total: -2.97 kcal Atomic # 14 Polarization: 15.63 SS G_CDS: -4.18 Total: 11.45 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.66 -4.83 -31.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697966.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.438 kcal (2) G-P(sol) polarization free energy of solvation -26.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds