Wall clock time and date at job start Mon Mar 30 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47048 * 2 1 4 4 C 1.35260 * 117.00194 * 179.97438 * 3 2 1 5 5 C 1.38803 * 120.58230 * 359.97438 * 4 3 2 6 6 C 1.37949 * 120.06697 * 179.76639 * 5 4 3 7 7 N 1.48016 * 119.33353 * 180.24959 * 6 5 4 8 8 O 1.31705 * 120.00222 * 0.26105 * 7 6 5 9 9 O 1.31706 * 120.00252 * 180.26422 * 7 6 5 10 10 C 1.39338 * 121.33412 * 0.51840 * 6 5 4 11 11 F 1.35092 * 119.39539 * 179.75369 * 10 6 5 12 12 C 1.36133 * 121.21138 * 359.47418 * 10 6 5 13 13 C 1.41590 * 119.81023 * 0.25584 * 12 10 6 14 14 C 1.39638 * 120.62422 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00002 * 154.82836 * 14 13 12 16 16 C 1.46643 * 120.00094 * 334.82562 * 14 13 12 17 17 N 1.29473 * 119.99942 * 161.19592 * 16 14 13 18 18 Si 1.86790 * 120.00094 * 341.19414 * 16 14 13 19 19 H 1.48506 * 109.47304 * 94.21924 * 18 16 14 20 20 H 1.48502 * 109.47202 * 214.21808 * 18 16 14 21 21 H 1.48504 * 109.47427 * 334.21815 * 18 16 14 22 22 H 1.08995 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47403 * 300.00480 * 1 2 3 24 24 H 1.08999 * 109.46705 * 60.00225 * 1 2 3 25 25 H 1.08997 * 109.47403 * 239.99520 * 2 1 3 26 26 H 1.08999 * 109.46705 * 119.99775 * 2 1 3 27 27 H 1.07994 * 119.96306 * 0.02562 * 5 4 3 28 28 H 1.07991 * 120.09570 * 180.27991 * 12 10 6 29 29 H 0.96996 * 119.99901 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3473 1.5245 0.0005 5 6 4.2040 0.4325 0.0016 6 6 5.5699 0.6256 -0.0027 7 7 6.4685 -0.5506 -0.0071 8 8 5.9620 -1.7664 -0.0121 9 8 7.7746 -0.3815 -0.0060 10 6 6.1208 1.9054 0.0026 11 9 7.4640 2.0491 0.0031 12 6 5.3303 3.0137 0.0015 13 6 3.9213 2.8733 0.0004 14 6 3.0944 3.9985 -0.0012 15 1 2.0928 3.9320 -0.3998 16 6 3.5858 5.2704 0.5384 17 7 2.9957 6.3788 0.2226 18 14 5.0631 5.2916 1.6813 19 1 6.2964 5.5383 0.8917 20 1 4.8953 6.3710 2.6873 21 1 5.1722 3.9824 2.3737 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8008 -0.5694 0.0016 28 1 5.7765 3.9971 0.0011 29 1 3.3210 7.2201 0.5792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575697966.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:59 Heat of formation + Delta-G solvation = -75.799546 kcal Electronic energy + Delta-G solvation = -18738.560474 eV Core-core repulsion = 15351.669526 eV Total energy + Delta-G solvation = -3386.890948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.02114 -40.91247 -39.22153 -38.07482 -36.25511 -34.66608 -33.38978 -32.52924 -30.46685 -28.94044 -25.74164 -24.86035 -23.08355 -22.66432 -20.37748 -19.76600 -18.67113 -18.23937 -17.73028 -17.17765 -17.09401 -16.77521 -16.70091 -15.95809 -15.75301 -15.16033 -15.02502 -14.28125 -14.09086 -13.73761 -13.49947 -13.19764 -13.17075 -12.90630 -12.46215 -12.09576 -12.00201 -11.73859 -11.60582 -11.52986 -11.41586 -11.36330 -10.46213 -9.79054 -9.46987 -7.18116 -1.33256 0.33946 0.45079 0.98426 1.09436 1.25790 1.37326 1.85610 1.96448 2.20545 2.64858 3.17162 3.51304 3.76073 4.10304 4.13621 4.22232 4.26248 4.44175 4.45276 4.59046 4.86591 4.92315 5.01285 5.02402 5.09619 5.27144 5.37730 5.47278 5.73089 5.78243 6.46112 6.55382 7.12803 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.010728 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.159007 B = 2609.259948 C = 4310.236483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 O -0.303 6.303 4 C 0.087 3.913 5 C -0.162 4.162 6 C -0.138 4.138 7 N 0.046 4.954 8 O -0.381 6.381 9 O -0.388 6.388 10 C 0.177 3.823 11 F -0.135 7.135 12 C -0.243 4.243 13 C 0.034 3.966 14 C -0.196 4.196 15 H 0.134 0.866 16 C 0.037 3.963 17 N -0.672 5.672 18 Si 0.947 3.053 19 H -0.242 1.242 20 H -0.239 1.239 21 H -0.253 1.253 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.140 0.860 28 H 0.155 0.845 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 7.350 1.930 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 O -0.216 6.216 4 C 0.038 3.962 5 C -0.183 4.183 6 C -0.250 4.250 7 N 0.441 4.559 8 O -0.518 6.518 9 O -0.523 6.523 10 C 0.156 3.844 11 F -0.114 7.114 12 C -0.265 4.265 13 C 0.029 3.971 14 C -0.218 4.218 15 H 0.151 0.849 16 C -0.202 4.202 17 N -0.289 5.289 18 Si 0.767 3.233 19 H -0.166 1.166 20 H -0.163 1.163 21 H -0.176 1.176 22 H 0.117 0.883 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.888 7.773 1.893 12.719 hybrid contribution 1.403 -0.801 0.184 1.626 sum -8.485 6.972 2.077 11.177 Atomic orbital electron populations 1.21764 0.90215 1.04165 1.03629 1.23095 0.97606 0.81025 1.01711 1.85821 1.17014 1.30466 1.88279 1.19868 0.82424 0.91383 1.02574 1.19958 0.89337 0.99449 1.09572 1.19543 0.89747 0.81288 1.34380 1.49750 1.02360 1.03256 1.00560 1.96000 1.79887 1.07400 1.68550 1.96087 0.92867 1.94351 1.68971 1.16923 0.76932 0.92026 0.98508 1.91496 1.30286 1.96512 1.93091 1.20598 0.92544 0.96570 1.16831 1.17997 0.90676 0.90144 0.98269 1.22184 1.00718 0.89417 1.09522 0.84880 1.28571 1.00464 0.93438 0.97698 1.68805 1.32572 1.01822 1.25668 0.85675 0.76915 0.81728 0.79022 1.16648 1.16291 1.17606 0.88286 0.91292 0.91309 0.92145 0.92131 0.84232 0.82791 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 10.28 71.98 0.74 -1.97 15 2 C 0.04 1.10 5.47 71.98 0.39 1.49 15 3 O -0.30 -10.25 9.62 -85.44 -0.82 -11.07 15 4 C 0.09 3.42 6.91 24.59 0.17 3.59 15 5 C -0.16 -7.21 8.55 22.34 0.19 -7.01 15 6 C -0.14 -7.06 6.90 36.57 0.25 -6.81 15 7 N 0.05 2.71 4.98 -46.00 -0.23 2.48 15 8 O -0.38 -22.70 19.08 3.51 0.07 -22.63 15 9 O -0.39 -24.05 17.96 3.50 0.06 -23.99 15 10 C 0.18 8.42 7.17 22.04 0.16 8.58 15 11 F -0.14 -6.70 15.24 44.97 0.69 -6.02 15 12 C -0.24 -9.80 7.22 22.61 0.16 -9.63 15 13 C 0.03 1.30 5.43 -19.93 -0.11 1.20 15 14 C -0.20 -6.70 9.60 24.80 0.24 -6.46 15 15 H 0.13 4.49 7.91 -2.91 -0.02 4.46 15 16 C 0.04 1.14 5.59 87.24 0.49 1.63 15 17 N -0.67 -19.67 13.89 23.23 0.32 -19.34 15 18 Si 0.95 26.69 24.57 68.60 1.69 28.37 15 19 H -0.24 -6.74 6.69 99.48 0.67 -6.08 15 20 H -0.24 -5.75 7.11 99.48 0.71 -5.04 15 21 H -0.25 -8.35 6.84 99.48 0.68 -7.67 15 22 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 25 H 0.06 1.65 7.68 -2.39 -0.02 1.63 15 26 H 0.06 1.65 7.68 -2.39 -0.02 1.64 15 27 H 0.14 5.98 5.81 -2.91 -0.02 5.96 15 28 H 0.16 5.47 4.25 -2.92 -0.01 5.45 15 29 H 0.34 8.04 8.27 -92.71 -0.77 7.27 15 Total: -1.00 -61.63 265.12 5.60 -56.04 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.14 Total: 11.57 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 2.69 Total: -15.40 kcal Atomic # 7 Polarization: -16.96 SS G_CDS: 0.09 Total: -16.87 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -0.69 Total: -57.69 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.69 Total: -6.02 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: 1.69 Total: 28.37 kcal Total: -61.63 5.60 -56.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697966.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.764 kcal (2) G-P(sol) polarization free energy of solvation -61.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds