Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47070 * 2 1 4 4 C 1.35299 * 117.00101 * 179.97438 * 3 2 1 5 5 C 1.39760 * 119.79255 * 0.02562 * 4 3 2 6 6 C 1.36019 * 120.23873 * 179.97438 * 5 4 3 7 7 N 1.48012 * 120.09228 * 179.97438 * 6 5 4 8 8 O 1.31700 * 120.00034 * 353.83650 * 7 6 5 9 9 O 1.31701 * 120.00040 * 173.83879 * 7 6 5 10 10 C 1.41652 * 119.81005 * 359.97438 * 6 5 4 11 11 C 1.39714 * 120.19804 * 179.97438 * 10 6 5 12 12 H 1.08003 * 119.99900 * 325.09626 * 11 10 6 13 13 C 1.46586 * 119.99820 * 145.08446 * 11 10 6 14 14 N 1.29488 * 120.00114 * 351.59816 * 13 11 10 15 15 Si 1.86796 * 119.99888 * 171.59686 * 13 11 10 16 16 H 1.48498 * 109.47487 * 90.00159 * 15 13 11 17 17 H 1.48504 * 109.47325 * 210.00079 * 15 13 11 18 18 H 1.48508 * 109.47402 * 330.00182 * 15 13 11 19 19 C 1.41570 * 119.60346 * 0.02562 * 10 6 5 20 20 C 1.36163 * 119.75451 * 359.73977 * 19 10 6 21 21 F 1.35106 * 119.90732 * 180.27128 * 20 19 10 22 22 H 1.09004 * 109.47388 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47227 * 300.00057 * 1 2 3 24 24 H 1.08996 * 109.47237 * 60.00296 * 1 2 3 25 25 H 1.08997 * 109.46828 * 120.00043 * 2 1 3 26 26 H 1.08997 * 109.47227 * 239.99943 * 2 1 3 27 27 H 1.07996 * 119.88357 * 359.95338 * 5 4 3 28 28 H 0.97005 * 119.99988 * 180.02562 * 14 13 11 29 29 H 1.08003 * 120.12381 * 180.02562 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3477 1.5246 0.0005 5 6 4.1950 0.4131 0.0005 6 6 5.5448 0.5809 0.0005 7 7 6.4392 -0.5984 0.0011 8 8 5.9336 -1.8083 0.1240 9 8 7.7407 -0.4379 -0.1213 10 6 6.0921 1.8874 0.0000 11 6 7.4773 2.0691 0.0006 12 1 8.1123 1.3791 0.5365 13 6 8.0690 3.1961 -0.7264 14 7 7.3310 3.9267 -1.5000 15 14 9.8876 3.5785 -0.5369 16 1 10.6597 2.8331 -1.5632 17 1 10.1080 5.0364 -0.7138 18 1 10.3409 3.1700 0.8170 19 6 5.2269 3.0080 0.0000 20 6 3.8783 2.8205 -0.0048 21 9 3.0498 3.8877 -0.0103 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.7766 -0.5825 0.0008 28 1 7.7226 4.6723 -1.9814 29 1 5.6351 4.0079 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575697989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -56.883017 kcal Electronic energy + Delta-G solvation = -18709.728096 eV Core-core repulsion = 15323.657430 eV Total energy + Delta-G solvation = -3386.070666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.14208 -39.33410 -37.70860 -36.17415 -34.28807 -32.67534 -31.59650 -30.19957 -29.72859 -26.14961 -24.67559 -23.21926 -21.35376 -20.86827 -18.54869 -17.78971 -16.79977 -16.49080 -15.91740 -15.80419 -15.33963 -14.98094 -14.73286 -14.23475 -13.79973 -13.43791 -12.86977 -12.69970 -12.59984 -12.49919 -12.06054 -11.63896 -11.56716 -11.21623 -11.07978 -10.85499 -10.48310 -10.33642 -9.85646 -9.57993 -9.25280 -9.11255 -8.37855 -7.86142 -7.58739 -5.15511 0.79646 2.10779 2.48519 2.68267 2.73672 2.79497 2.96975 3.39474 3.69125 3.74718 4.59471 4.95180 5.14502 5.22473 5.47108 5.56620 5.68415 5.87661 5.95991 6.02516 6.11772 6.17308 6.40292 6.47987 6.70103 6.91684 7.18246 7.37128 7.61127 7.78053 7.84816 8.10898 8.63719 9.08618 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.007780 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.052280 B = 3598.137426 C = 4719.262305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.313 6.313 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.088 4.088 7 N 0.041 4.959 8 O -0.349 6.349 9 O -0.273 6.273 10 C 0.091 3.909 11 C -0.312 4.312 12 H 0.134 0.866 13 C 0.054 3.946 14 N -0.711 5.711 15 Si 0.942 3.058 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.245 1.245 19 C -0.131 4.131 20 C 0.118 3.882 21 F -0.143 7.143 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.135 0.865 28 H 0.309 0.691 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 3.387 0.823 5.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.228 6.228 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.190 4.190 7 N 0.461 4.539 8 O -0.494 6.494 9 O -0.435 6.435 10 C 0.086 3.914 11 C -0.339 4.339 12 H 0.151 0.849 13 C -0.178 4.178 14 N -0.332 5.332 15 Si 0.762 3.238 16 H -0.177 1.177 17 H -0.191 1.191 18 H -0.168 1.168 19 C -0.152 4.152 20 C 0.098 3.902 21 F -0.122 7.122 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.589 3.821 0.669 6.009 hybrid contribution 0.703 -0.211 -0.156 0.751 sum -3.886 3.610 0.513 5.329 Atomic orbital electron populations 1.21736 0.93332 1.02305 1.03132 1.22660 0.95200 0.82874 1.01340 1.85832 1.18421 1.28074 1.90489 1.18337 0.82376 0.91591 1.13271 1.19971 0.91643 0.97954 1.02258 1.19373 0.87779 0.83491 1.28394 1.49589 1.02445 1.02718 0.99117 1.96077 1.79911 1.07453 1.65938 1.96044 0.92676 1.94020 1.60719 1.16918 0.94053 0.87660 0.92780 1.22252 0.92578 1.03868 1.15193 0.84883 1.28083 1.03870 0.93067 0.92802 1.69040 1.40800 1.10557 1.12793 0.85691 0.77552 0.78522 0.81986 1.17720 1.19133 1.16818 1.21018 0.89129 1.00296 1.04726 1.16784 0.87682 0.80401 1.05374 1.91421 1.72184 1.54411 1.94182 0.90782 0.91797 0.91802 0.92374 0.92427 0.84772 0.87828 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 15 2 C 0.05 0.84 5.45 37.16 0.20 1.05 15 3 O -0.31 -6.10 9.97 -17.59 -0.18 -6.27 15 4 C -0.01 -0.18 6.74 -38.34 -0.26 -0.44 15 5 C -0.10 -2.22 8.50 -39.81 -0.34 -2.56 15 6 C -0.09 -2.21 6.89 -79.45 -0.55 -2.76 15 7 N 0.04 1.13 4.98 34.21 0.17 1.30 15 8 O -0.35 -9.71 19.14 -31.57 -0.60 -10.32 15 9 O -0.27 -7.53 16.26 -31.57 -0.51 -8.04 15 10 C 0.09 2.20 5.52 -106.77 -0.59 1.61 15 11 C -0.31 -7.24 7.84 -35.67 -0.28 -7.52 15 12 H 0.13 3.18 5.88 -52.48 -0.31 2.87 15 13 C 0.05 1.10 5.42 -15.17 -0.08 1.01 15 14 N -0.71 -14.42 11.30 55.99 0.63 -13.79 15 15 Si 0.94 15.24 29.65 -169.99 -5.04 10.19 15 16 H -0.25 -4.19 7.11 56.52 0.40 -3.79 15 17 H -0.27 -4.01 7.11 56.52 0.40 -3.61 15 18 H -0.25 -3.98 7.11 56.52 0.40 -3.58 15 19 C -0.13 -2.92 8.60 -39.06 -0.34 -3.25 15 20 C 0.12 2.57 7.26 -39.65 -0.29 2.29 15 21 F -0.14 -3.00 17.10 2.25 0.04 -2.96 15 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.06 0.87 7.64 -51.93 -0.40 0.48 15 26 H 0.06 0.88 7.64 -51.93 -0.40 0.48 15 27 H 0.13 2.87 5.75 -52.49 -0.30 2.57 15 28 H 0.31 5.37 8.27 -40.82 -0.34 5.03 15 29 H 0.15 3.13 6.67 -52.48 -0.35 2.78 15 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -27.94 268.48 -5.73 -33.67 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.15 Total: 4.11 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.13 Total: -11.93 kcal Atomic # 7 Polarization: -13.30 SS G_CDS: 0.80 Total: -12.50 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.29 Total: -24.63 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 15.24 SS G_CDS: -5.04 Total: 10.19 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.94 -5.73 -33.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.209 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds