Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47070 * 2 1 4 4 C 1.35299 * 117.00101 * 179.97438 * 3 2 1 5 5 C 1.39760 * 119.79255 * 0.02562 * 4 3 2 6 6 C 1.36019 * 120.23873 * 179.97438 * 5 4 3 7 7 N 1.48012 * 120.09228 * 179.97438 * 6 5 4 8 8 O 1.31700 * 120.00034 * 353.83650 * 7 6 5 9 9 O 1.31701 * 120.00040 * 173.83879 * 7 6 5 10 10 C 1.41652 * 119.81005 * 359.97438 * 6 5 4 11 11 C 1.39714 * 120.19804 * 179.97438 * 10 6 5 12 12 H 1.08003 * 119.99900 * 325.09626 * 11 10 6 13 13 C 1.46586 * 119.99820 * 145.08446 * 11 10 6 14 14 N 1.29488 * 120.00114 * 351.59816 * 13 11 10 15 15 Si 1.86796 * 119.99888 * 171.59686 * 13 11 10 16 16 H 1.48498 * 109.47487 * 90.00159 * 15 13 11 17 17 H 1.48504 * 109.47325 * 210.00079 * 15 13 11 18 18 H 1.48508 * 109.47402 * 330.00182 * 15 13 11 19 19 C 1.41570 * 119.60346 * 0.02562 * 10 6 5 20 20 C 1.36163 * 119.75451 * 359.73977 * 19 10 6 21 21 F 1.35106 * 119.90732 * 180.27128 * 20 19 10 22 22 H 1.09004 * 109.47388 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47227 * 300.00057 * 1 2 3 24 24 H 1.08996 * 109.47237 * 60.00296 * 1 2 3 25 25 H 1.08997 * 109.46828 * 120.00043 * 2 1 3 26 26 H 1.08997 * 109.47227 * 239.99943 * 2 1 3 27 27 H 1.07996 * 119.88357 * 359.95338 * 5 4 3 28 28 H 0.97005 * 119.99988 * 180.02562 * 14 13 11 29 29 H 1.08003 * 120.12381 * 180.02562 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3477 1.5246 0.0005 5 6 4.1950 0.4131 0.0005 6 6 5.5448 0.5809 0.0005 7 7 6.4392 -0.5984 0.0011 8 8 5.9336 -1.8083 0.1240 9 8 7.7407 -0.4379 -0.1213 10 6 6.0921 1.8874 0.0000 11 6 7.4773 2.0691 0.0006 12 1 8.1123 1.3791 0.5365 13 6 8.0690 3.1961 -0.7264 14 7 7.3310 3.9267 -1.5000 15 14 9.8876 3.5785 -0.5369 16 1 10.6597 2.8331 -1.5632 17 1 10.1080 5.0364 -0.7138 18 1 10.3409 3.1700 0.8170 19 6 5.2269 3.0080 0.0000 20 6 3.8783 2.8205 -0.0048 21 9 3.0498 3.8877 -0.0103 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.7766 -0.5825 0.0008 28 1 7.7226 4.6723 -1.9814 29 1 5.6351 4.0079 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575697989.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -72.827979 kcal Electronic energy + Delta-G solvation = -18710.419522 eV Core-core repulsion = 15323.657430 eV Total energy + Delta-G solvation = -3386.762091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.85587 -41.03178 -39.41233 -37.94636 -36.03782 -34.50199 -32.92216 -31.98950 -31.40574 -27.99329 -26.38537 -24.75060 -22.91842 -22.62047 -20.32408 -19.45962 -18.59045 -18.26868 -17.58276 -17.30308 -17.05271 -16.57494 -16.32385 -16.07144 -15.49468 -14.96955 -14.49382 -14.25726 -14.00549 -13.72145 -13.45747 -13.38017 -13.14100 -12.67467 -12.59765 -12.17140 -11.95312 -11.76812 -11.45551 -11.39537 -11.20867 -11.03240 -10.20488 -9.57623 -9.33001 -7.03538 -1.15618 0.38568 0.63709 1.20029 1.30473 1.39677 1.52709 2.06147 2.10582 2.19577 2.75581 3.19955 3.75864 4.00778 4.02122 4.13548 4.28357 4.34712 4.40390 4.56216 4.65695 4.87797 4.90754 4.93555 5.07302 5.21887 5.36701 5.58900 5.78062 5.87316 6.03153 6.40251 6.79617 7.43351 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.007780 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.052280 B = 3598.137426 C = 4719.262305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.042 3.958 3 O -0.317 6.317 4 C 0.033 3.967 5 C -0.131 4.131 6 C -0.079 4.079 7 N 0.036 4.964 8 O -0.435 6.435 9 O -0.353 6.353 10 C 0.040 3.960 11 C -0.260 4.260 12 H 0.125 0.875 13 C 0.019 3.981 14 N -0.702 5.702 15 Si 1.008 2.992 16 H -0.259 1.259 17 H -0.233 1.233 18 H -0.248 1.248 19 C -0.103 4.103 20 C 0.102 3.898 21 F -0.134 7.134 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.138 0.862 28 H 0.334 0.666 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 7.067 0.368 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 O -0.231 6.231 4 C -0.017 4.017 5 C -0.151 4.151 6 C -0.189 4.189 7 N 0.422 4.578 8 O -0.556 6.556 9 O -0.491 6.491 10 C 0.035 3.965 11 C -0.289 4.289 12 H 0.142 0.858 13 C -0.213 4.213 14 N -0.323 5.323 15 Si 0.823 3.177 16 H -0.183 1.183 17 H -0.156 1.156 18 H -0.171 1.171 19 C -0.124 4.124 20 C 0.082 3.918 21 F -0.113 7.113 22 H 0.120 0.880 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.786 7.287 0.210 8.720 hybrid contribution 0.640 -0.686 -0.107 0.945 sum -4.146 6.600 0.104 7.795 Atomic orbital electron populations 1.21771 0.90031 1.04346 1.03568 1.23079 0.97744 0.80864 1.01602 1.85858 1.16921 1.30869 1.89481 1.18498 0.83309 0.91246 1.08634 1.19973 0.91079 0.98662 1.05390 1.19756 0.88601 0.83404 1.27111 1.49499 1.02138 1.02700 1.03430 1.95991 1.79952 1.08650 1.71046 1.95935 0.93784 1.94021 1.65398 1.17221 0.94892 0.88037 0.96372 1.22888 0.92689 1.03162 1.10117 0.85785 1.28944 1.07973 0.92141 0.92283 1.68937 1.42907 1.09883 1.10578 0.84783 0.71353 0.80045 0.81497 1.18318 1.15587 1.17142 1.21090 0.89160 0.99976 1.02140 1.16758 0.87765 0.80736 1.06586 1.91443 1.71838 1.53835 1.94174 0.87967 0.91274 0.91405 0.92105 0.92338 0.84422 0.85124 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.28 71.98 0.74 -2.20 15 2 C 0.04 1.24 5.45 71.98 0.39 1.63 15 3 O -0.32 -11.81 9.97 -85.86 -0.86 -12.67 15 4 C 0.03 1.37 6.74 23.07 0.16 1.53 15 5 C -0.13 -6.07 8.50 22.12 0.19 -5.89 15 6 C -0.08 -4.09 6.89 36.70 0.25 -3.84 15 7 N 0.04 2.10 4.98 -45.69 -0.23 1.87 15 8 O -0.43 -26.68 19.14 3.51 0.07 -26.62 15 9 O -0.35 -21.05 16.26 3.51 0.06 -20.99 15 10 C 0.04 1.92 5.52 -21.26 -0.12 1.80 15 11 C -0.26 -11.84 7.84 24.81 0.19 -11.64 15 12 H 0.12 6.01 5.88 -2.91 -0.02 5.99 15 13 C 0.02 0.71 5.42 87.22 0.47 1.18 15 14 N -0.70 -25.47 11.30 23.22 0.26 -25.21 15 15 Si 1.01 27.81 29.65 68.60 2.03 29.84 15 16 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 17 H -0.23 -5.32 7.11 99.48 0.71 -4.61 15 18 H -0.25 -7.04 7.11 99.48 0.71 -6.33 15 19 C -0.10 -4.37 8.60 22.61 0.19 -4.17 15 20 C 0.10 4.23 7.26 22.22 0.16 4.40 15 21 F -0.13 -5.22 17.10 44.97 0.77 -4.46 15 22 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.06 1.80 7.64 -2.39 -0.02 1.78 15 26 H 0.06 1.75 7.64 -2.39 -0.02 1.73 15 27 H 0.14 6.20 5.75 -2.91 -0.02 6.19 15 28 H 0.33 9.81 8.27 -92.70 -0.77 9.05 15 29 H 0.16 6.28 6.67 -2.91 -0.02 6.26 15 Total: -1.00 -63.81 268.48 5.95 -57.86 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.21 Total: 17.57 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 2.63 Total: -17.21 kcal Atomic # 7 Polarization: -23.37 SS G_CDS: 0.03 Total: -23.33 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -0.73 Total: -60.27 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.77 Total: -4.46 kcal Atomic # 14 Polarization: 27.81 SS G_CDS: 2.03 Total: 29.84 kcal Total: -63.81 5.95 -57.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575697989.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.969 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds