Wall clock time and date at job start Mon Mar 30 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47155 * 2 1 4 4 C 1.35920 * 116.99930 * 179.97438 * 3 2 1 5 5 C 1.37680 * 119.85292 * 180.02562 * 4 3 2 6 6 C 1.41291 * 119.68466 * 179.97438 * 5 4 3 7 7 C 1.40008 * 120.30065 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00427 * 155.59669 * 7 6 5 9 9 C 1.46590 * 119.99568 * 335.59326 * 7 6 5 10 10 N 1.29483 * 120.00185 * 344.45803 * 9 7 6 11 11 Si 1.86802 * 119.99728 * 164.45117 * 9 7 6 12 12 H 1.48502 * 109.47330 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46665 * 120.00159 * 11 9 7 14 14 H 1.48498 * 109.47585 * 240.00311 * 11 9 7 15 15 C 1.41748 * 119.40509 * 0.02562 * 6 5 4 16 16 F 1.35100 * 120.16146 * 179.97438 * 15 6 5 17 17 C 1.37993 * 119.68380 * 0.02562 * 15 6 5 18 18 N 1.48020 * 119.84436 * 180.02562 * 17 15 6 19 19 O 1.31696 * 120.00014 * 179.97438 * 18 17 15 20 20 O 1.31696 * 119.99790 * 359.97438 * 18 17 15 21 21 C 1.38387 * 120.30865 * 359.97438 * 17 15 6 22 22 H 1.09001 * 109.47104 * 300.00526 * 1 2 3 23 23 H 1.09011 * 109.47197 * 59.99493 * 1 2 3 24 24 H 1.08996 * 109.47657 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47008 * 240.00256 * 2 1 3 26 26 H 1.08995 * 109.46847 * 120.00286 * 2 1 3 27 27 H 1.08003 * 120.15497 * 0.02562 * 5 4 3 28 28 H 0.97005 * 119.99960 * 179.97438 * 10 9 7 29 29 H 1.08003 * 119.68794 * 179.74601 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 3.8768 2.7989 0.0011 6 6 5.2781 2.9799 0.0022 7 6 5.8238 4.2693 0.0033 8 1 6.8183 4.4344 0.3905 9 6 5.0452 5.3951 -0.5212 10 7 3.9983 5.1743 -1.2505 11 14 5.5632 7.1483 -0.1371 12 1 6.7836 7.1299 0.7087 13 1 5.8502 7.8683 -1.4039 14 1 4.4679 7.8405 0.5885 15 6 6.1265 1.8444 0.0022 16 9 7.4685 1.9997 0.0027 17 6 5.5751 0.5794 0.0005 18 7 6.4577 -0.6089 0.0011 19 8 5.9348 -1.8176 0.0000 20 8 7.7659 -0.4574 0.0026 21 6 4.2009 0.4166 -0.0006 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2190 3.6555 0.0015 28 1 3.4829 5.9193 -1.5973 29 1 3.7801 -0.5781 -0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575698029.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:26 Heat of formation + Delta-G solvation = -55.523832 kcal Electronic energy + Delta-G solvation = -18614.672936 eV Core-core repulsion = 15228.661209 eV Total energy + Delta-G solvation = -3386.011727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.78515 -39.39085 -38.12057 -36.50032 -34.15397 -33.61424 -31.63280 -30.86380 -28.78766 -25.90178 -25.71223 -23.08032 -21.40642 -21.02993 -18.84410 -17.48207 -16.87278 -16.50243 -16.13489 -15.78197 -15.72846 -15.31088 -15.10156 -14.26207 -13.60642 -13.44202 -12.83522 -12.73475 -12.46941 -12.24841 -12.01296 -11.57437 -11.28681 -11.23341 -10.92159 -10.75216 -10.60598 -10.58578 -10.22060 -10.06792 -9.98867 -9.80611 -8.47196 -7.63308 -7.40059 -5.00962 0.18052 1.98372 2.12754 2.26219 2.74218 2.76832 2.82105 3.46433 3.73076 3.86755 4.73211 5.02043 5.14610 5.23969 5.46752 5.59324 5.76292 5.83759 5.95702 5.97289 6.08355 6.13754 6.33124 6.58804 6.70311 7.06926 7.15114 7.27880 7.58176 7.68394 7.91962 8.08210 8.17211 9.37124 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.008922 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.552254 B = 3137.688837 C = 4852.384807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.151 3.849 5 C -0.164 4.164 6 C 0.097 3.903 7 C -0.418 4.418 8 H 0.102 0.898 9 C 0.071 3.929 10 N -0.733 5.733 11 Si 0.931 3.069 12 H -0.250 1.250 13 H -0.265 1.265 14 H -0.263 1.263 15 C 0.022 3.978 16 F -0.124 7.124 17 C 0.039 3.961 18 N -0.003 5.003 19 O -0.213 6.213 20 O -0.186 6.186 21 C -0.280 4.280 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.147 0.853 28 H 0.300 0.700 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 0.754 1.141 6.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.106 3.894 5 C -0.185 4.185 6 C 0.092 3.908 7 C -0.442 4.442 8 H 0.120 0.880 9 C -0.159 4.159 10 N -0.352 5.352 11 Si 0.752 3.248 12 H -0.173 1.173 13 H -0.190 1.190 14 H -0.188 1.188 15 C -0.001 4.001 16 F -0.103 7.103 17 C -0.049 4.049 18 N 0.469 4.531 19 O -0.400 6.400 20 O -0.378 6.378 21 C -0.302 4.302 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.113 0.887 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.620 1.460 0.982 6.849 hybrid contribution 0.674 -0.045 -0.028 0.676 sum -5.945 1.414 0.954 6.185 Atomic orbital electron populations 1.21751 0.93389 1.02267 1.03211 1.22667 0.95181 0.83032 1.01337 1.86064 1.19363 1.28046 1.89429 1.18400 0.81033 0.93025 0.96971 1.20738 0.94168 0.94113 1.09478 1.17161 0.90282 0.90921 0.92391 1.20867 1.01985 0.89569 1.31816 0.87968 1.27626 0.93203 1.03354 0.91700 1.69064 1.11794 1.36991 1.17387 0.85861 0.80776 0.78123 0.80040 1.17254 1.19000 1.18755 1.17756 0.78002 0.90790 1.13534 1.91443 1.28784 1.96254 1.93772 1.19879 0.89433 0.80489 1.15068 1.50554 1.03325 1.04054 0.95178 1.96158 1.78874 1.07395 1.57558 1.96244 0.90999 1.94690 1.55899 1.20020 0.89586 0.99244 1.21309 0.91779 0.91727 0.90860 0.92340 0.92361 0.83518 0.88669 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 15 2 C 0.05 0.80 5.45 37.16 0.20 1.00 15 3 O -0.31 -6.07 10.13 -19.49 -0.20 -6.27 15 4 C 0.15 3.30 6.67 -39.30 -0.26 3.03 15 5 C -0.16 -3.81 8.69 -38.63 -0.34 -4.14 15 6 C 0.10 2.35 5.62 -106.73 -0.60 1.75 15 7 C -0.42 -9.69 9.05 -35.55 -0.32 -10.01 15 8 H 0.10 2.31 7.80 -52.49 -0.41 1.90 15 9 C 0.07 1.48 5.35 -15.17 -0.08 1.40 15 10 N -0.73 -15.66 10.95 55.99 0.61 -15.05 15 11 Si 0.93 15.43 29.67 -169.99 -5.04 10.39 15 12 H -0.25 -4.18 7.11 56.52 0.40 -3.78 15 13 H -0.27 -4.33 7.11 56.52 0.40 -3.93 15 14 H -0.26 -4.24 7.11 56.52 0.40 -3.83 15 15 C 0.02 0.54 7.29 -38.33 -0.28 0.26 15 16 F -0.12 -3.10 14.82 2.25 0.03 -3.06 15 17 C 0.04 0.95 6.88 -79.98 -0.55 0.40 15 18 N 0.00 -0.07 4.98 33.95 0.17 0.09 15 19 O -0.21 -5.03 19.13 -31.57 -0.60 -5.63 15 20 O -0.19 -4.64 18.05 -31.57 -0.57 -5.21 15 21 C -0.28 -6.17 8.58 -39.05 -0.34 -6.51 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.06 0.74 8.14 -51.92 -0.42 0.31 15 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.06 0.86 7.64 -51.93 -0.40 0.46 15 26 H 0.06 0.84 7.66 -51.93 -0.40 0.44 15 27 H 0.15 3.41 6.10 -52.48 -0.32 3.09 15 28 H 0.30 5.58 8.27 -40.82 -0.34 5.25 15 29 H 0.13 2.68 5.75 -52.48 -0.30 2.38 15 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -26.05 270.57 -5.93 -31.98 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.23 Total: 2.83 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.18 Total: -14.15 kcal Atomic # 7 Polarization: -15.73 SS G_CDS: 0.78 Total: -14.95 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.37 Total: -17.11 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.03 Total: -3.06 kcal Atomic # 14 Polarization: 15.43 SS G_CDS: -5.04 Total: 10.39 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.05 -5.93 -31.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575698029.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.547 kcal (2) G-P(sol) polarization free energy of solvation -26.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds