Wall clock time and date at job start Mon Mar 30 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47155 * 2 1 4 4 C 1.35920 * 116.99930 * 179.97438 * 3 2 1 5 5 C 1.37680 * 119.85292 * 180.02562 * 4 3 2 6 6 C 1.41291 * 119.68466 * 179.97438 * 5 4 3 7 7 C 1.40008 * 120.30065 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00427 * 155.59669 * 7 6 5 9 9 C 1.46590 * 119.99568 * 335.59326 * 7 6 5 10 10 N 1.29483 * 120.00185 * 344.45803 * 9 7 6 11 11 Si 1.86802 * 119.99728 * 164.45117 * 9 7 6 12 12 H 1.48502 * 109.47330 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46665 * 120.00159 * 11 9 7 14 14 H 1.48498 * 109.47585 * 240.00311 * 11 9 7 15 15 C 1.41748 * 119.40509 * 0.02562 * 6 5 4 16 16 F 1.35100 * 120.16146 * 179.97438 * 15 6 5 17 17 C 1.37993 * 119.68380 * 0.02562 * 15 6 5 18 18 N 1.48020 * 119.84436 * 180.02562 * 17 15 6 19 19 O 1.31696 * 120.00014 * 179.97438 * 18 17 15 20 20 O 1.31696 * 119.99790 * 359.97438 * 18 17 15 21 21 C 1.38387 * 120.30865 * 359.97438 * 17 15 6 22 22 H 1.09001 * 109.47104 * 300.00526 * 1 2 3 23 23 H 1.09011 * 109.47197 * 59.99493 * 1 2 3 24 24 H 1.08996 * 109.47657 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47008 * 240.00256 * 2 1 3 26 26 H 1.08995 * 109.46847 * 120.00286 * 2 1 3 27 27 H 1.08003 * 120.15497 * 0.02562 * 5 4 3 28 28 H 0.97005 * 119.99960 * 179.97438 * 10 9 7 29 29 H 1.08003 * 119.68794 * 179.74601 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 3.8768 2.7989 0.0011 6 6 5.2781 2.9799 0.0022 7 6 5.8238 4.2693 0.0033 8 1 6.8183 4.4344 0.3905 9 6 5.0452 5.3951 -0.5212 10 7 3.9983 5.1743 -1.2505 11 14 5.5632 7.1483 -0.1371 12 1 6.7836 7.1299 0.7087 13 1 5.8502 7.8683 -1.4039 14 1 4.4679 7.8405 0.5885 15 6 6.1265 1.8444 0.0022 16 9 7.4685 1.9997 0.0027 17 6 5.5751 0.5794 0.0005 18 7 6.4577 -0.6089 0.0011 19 8 5.9348 -1.8176 0.0000 20 8 7.7659 -0.4574 0.0026 21 6 4.2009 0.4166 -0.0006 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.2190 3.6555 0.0015 28 1 3.4829 5.9193 -1.5973 29 1 3.7801 -0.5781 -0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575698029.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:26 Heat of formation + Delta-G solvation = -68.950672 kcal Electronic energy + Delta-G solvation = -18615.255168 eV Core-core repulsion = 15228.661209 eV Total energy + Delta-G solvation = -3386.593959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.66222 -41.06966 -39.94176 -38.18587 -35.83887 -35.54345 -32.96321 -32.53844 -30.43392 -27.62971 -27.56466 -24.41098 -23.17975 -22.64258 -20.57577 -19.36260 -18.63300 -18.26855 -17.84027 -17.48921 -17.38045 -16.90399 -16.67165 -16.16439 -15.19542 -14.96193 -14.39661 -14.14716 -13.93554 -13.57950 -13.40454 -13.00891 -12.84467 -12.73387 -12.56825 -12.47632 -12.31562 -12.02947 -11.92619 -11.79888 -11.62524 -11.37502 -10.25483 -9.31497 -9.05810 -6.80038 -1.71940 0.09549 0.41379 0.42206 1.36363 1.41273 1.54941 2.09341 2.21773 2.31936 2.96363 3.22897 3.89314 4.01085 4.07783 4.11618 4.21704 4.24992 4.41137 4.69367 4.72885 4.82434 4.97287 4.98581 5.21675 5.35461 5.39718 5.46550 5.70020 5.95943 6.17604 6.33012 6.52412 7.80979 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.008922 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.552254 B = 3137.688837 C = 4852.384807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 O -0.321 6.321 4 C 0.159 3.841 5 C -0.173 4.173 6 C 0.080 3.920 7 C -0.440 4.440 8 H 0.098 0.902 9 C 0.041 3.959 10 N -0.754 5.754 11 Si 1.002 2.998 12 H -0.255 1.255 13 H -0.256 1.256 14 H -0.249 1.249 15 C -0.017 4.017 16 F -0.135 7.135 17 C 0.031 3.969 18 N -0.006 5.006 19 O -0.181 6.181 20 O -0.224 6.224 21 C -0.272 4.272 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.316 0.684 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 1.227 1.145 7.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 O -0.236 6.236 4 C 0.112 3.888 5 C -0.194 4.194 6 C 0.075 3.925 7 C -0.464 4.464 8 H 0.116 0.884 9 C -0.187 4.187 10 N -0.373 5.373 11 Si 0.820 3.180 12 H -0.178 1.178 13 H -0.180 1.180 14 H -0.173 1.173 15 C -0.039 4.039 16 F -0.113 7.113 17 C -0.057 4.057 18 N 0.466 4.534 19 O -0.377 6.377 20 O -0.406 6.406 21 C -0.293 4.293 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.130 0.870 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.321 1.961 0.978 8.604 hybrid contribution 1.018 -0.296 -0.061 1.062 sum -7.302 1.666 0.917 7.546 Atomic orbital electron populations 1.21784 0.90486 1.04313 1.03358 1.23103 0.97512 0.80999 1.01908 1.86083 1.17585 1.30986 1.88901 1.18365 0.82265 0.92394 0.95751 1.20764 0.93777 0.94808 1.10029 1.17418 0.90882 0.91282 0.92908 1.21176 1.02487 0.90469 1.32255 0.88444 1.28456 0.92854 1.06477 0.90901 1.69029 1.12161 1.39122 1.17021 0.84838 0.80379 0.72787 0.80036 1.17824 1.18008 1.17303 1.17943 0.77863 0.91489 1.16609 1.91392 1.29426 1.96351 1.94177 1.20135 0.90071 0.80143 1.15360 1.50650 1.03436 1.04207 0.95137 1.96118 1.78763 1.07539 1.55295 1.96253 0.91191 1.94760 1.58429 1.20249 0.88672 1.00342 1.20058 0.91511 0.91729 0.87833 0.91908 0.91584 0.83805 0.87040 0.82846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.28 71.98 0.74 -2.09 15 2 C 0.04 1.08 5.45 71.98 0.39 1.48 15 3 O -0.32 -11.91 10.13 -92.65 -0.94 -12.84 15 4 C 0.16 6.81 6.67 22.45 0.15 6.96 15 5 C -0.17 -8.08 8.69 22.89 0.20 -7.88 15 6 C 0.08 3.95 5.62 -21.23 -0.12 3.83 15 7 C -0.44 -20.80 9.05 24.88 0.23 -20.57 15 8 H 0.10 4.56 7.80 -2.92 -0.02 4.53 15 9 C 0.04 1.69 5.35 87.22 0.47 2.15 15 10 N -0.75 -31.64 10.95 23.22 0.25 -31.39 15 11 Si 1.00 30.41 29.67 68.60 2.04 32.45 15 12 H -0.26 -7.90 7.11 99.48 0.71 -7.20 15 13 H -0.26 -7.38 7.11 99.48 0.71 -6.67 15 14 H -0.25 -7.01 7.11 99.48 0.71 -6.30 15 15 C -0.02 -0.86 7.29 23.08 0.17 -0.69 15 16 F -0.13 -7.03 14.82 44.97 0.67 -6.37 15 17 C 0.03 1.50 6.88 36.35 0.25 1.75 15 18 N -0.01 -0.27 4.98 -46.51 -0.23 -0.51 15 19 O -0.18 -8.24 19.13 3.52 0.07 -8.17 15 20 O -0.22 -11.46 18.05 3.52 0.06 -11.39 15 21 C -0.27 -11.73 8.58 22.62 0.19 -11.54 15 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.06 1.29 8.14 -2.38 -0.02 1.27 15 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 25 H 0.06 1.68 7.64 -2.39 -0.02 1.67 15 26 H 0.07 1.73 7.66 -2.39 -0.02 1.71 15 27 H 0.14 6.71 6.10 -2.91 -0.02 6.69 15 28 H 0.32 11.28 8.27 -92.70 -0.77 10.52 15 29 H 0.15 5.86 5.75 -2.91 -0.02 5.85 15 Total: -1.00 -55.82 270.57 5.79 -50.04 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.20 Total: 14.79 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 2.67 Total: -26.60 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.02 Total: -31.89 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.81 Total: -32.41 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.67 Total: -6.37 kcal Atomic # 14 Polarization: 30.41 SS G_CDS: 2.04 Total: 32.45 kcal Total: -55.82 5.79 -50.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575698029.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.914 kcal (2) G-P(sol) polarization free energy of solvation -55.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds