Wall clock time and date at job start Mon Mar 30 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46736 * 2 1 4 4 C 1.35293 * 116.99452 * 179.97438 * 3 2 1 5 5 C 1.46671 * 120.58994 * 90.00637 * 4 3 2 6 6 C 1.39396 * 120.66599 * 359.97438 * 5 4 3 7 7 H 1.07995 * 119.99915 * 35.32840 * 6 5 4 8 8 C 1.46717 * 120.00028 * 215.04513 * 6 5 4 9 9 N 1.29431 * 119.99710 * 19.58823 * 8 6 5 10 10 Si 1.86792 * 120.00309 * 199.58481 * 8 6 5 11 11 H 1.48504 * 109.46967 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47013 * 120.00200 * 10 8 6 13 13 H 1.48499 * 109.47303 * 240.00465 * 10 8 6 14 14 C 1.41958 * 118.66601 * 179.72229 * 5 4 3 15 15 F 1.35091 * 120.14285 * 180.26971 * 14 5 4 16 16 C 1.36470 * 119.71903 * 0.25310 * 14 5 4 17 17 C 1.38713 * 121.21912 * 0.02562 * 16 14 5 18 18 C 1.38263 * 121.42584 * 359.97438 * 17 16 14 19 19 N 1.48019 * 119.91982 * 179.97438 * 18 17 16 20 20 O 1.31696 * 120.00146 * 0.02562 * 19 18 17 21 21 O 1.31696 * 119.99664 * 180.02562 * 19 18 17 22 22 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47282 * 299.99855 * 1 2 3 24 24 H 1.08995 * 109.47327 * 59.99934 * 1 2 3 25 25 H 1.08994 * 109.47513 * 240.00268 * 2 1 3 26 26 H 1.09002 * 109.47045 * 119.99833 * 2 1 3 27 27 H 0.96996 * 119.99894 * 179.97438 * 9 8 6 28 28 H 1.07996 * 119.39381 * 179.97438 * 16 14 5 29 29 H 1.07995 * 119.28949 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3475 1.5246 0.0005 5 6 4.0880 1.6223 -1.2618 6 6 3.4240 1.5339 -2.4842 7 1 2.4323 1.9480 -2.5912 8 6 4.0748 0.8838 -3.6272 9 7 5.0659 0.0744 -3.4331 10 14 3.4729 1.2241 -5.3624 11 1 2.3361 2.1785 -5.3138 12 1 4.5773 1.8108 -6.1633 13 1 3.0270 -0.0459 -5.9897 14 6 5.4937 1.8141 -1.2135 15 9 6.2045 1.9137 -2.3581 16 6 6.1241 1.8980 -0.0060 17 6 5.4164 1.7986 1.1829 18 6 4.0465 1.6115 1.1929 19 7 3.3248 1.5094 2.4812 20 8 3.9873 1.5972 3.6160 21 8 2.0201 1.3307 2.4926 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.4960 -0.3557 -4.1887 28 1 7.1938 2.0435 0.0245 29 1 5.9468 1.8697 2.1209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575698043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:01 Heat of formation + Delta-G solvation = -45.236858 kcal Electronic energy + Delta-G solvation = -19168.045281 eV Core-core repulsion = 15782.479630 eV Total energy + Delta-G solvation = -3385.565651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.56391 -39.16942 -37.45759 -36.21310 -34.21682 -33.47584 -31.19916 -30.67022 -29.23390 -25.55353 -25.22945 -22.56781 -21.49598 -21.02259 -18.57951 -17.45761 -17.20882 -16.70398 -15.86717 -15.46279 -15.20573 -14.97533 -14.32081 -14.21078 -13.88991 -13.39893 -12.64733 -12.59620 -12.19160 -12.09583 -11.72169 -11.60733 -11.23591 -11.15767 -10.80511 -10.72892 -10.49911 -10.23628 -10.13254 -9.89934 -9.77239 -9.04159 -8.12074 -8.06954 -7.50117 -4.94823 0.27219 1.94450 2.11018 2.27878 2.74547 2.78077 2.83088 3.48570 3.83404 4.26147 4.74695 5.35316 5.57854 5.65218 5.70776 5.78415 5.92306 6.02421 6.11799 6.18912 6.32114 6.45581 6.55058 6.68116 6.81184 6.91728 6.97726 7.38611 7.72505 7.74040 7.86907 8.04072 8.45375 9.39065 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.009165 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.841396 B = 3054.442862 C = 4124.203307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 O -0.302 6.302 4 C 0.047 3.953 5 C 0.065 3.935 6 C -0.412 4.412 7 H 0.107 0.893 8 C 0.069 3.931 9 N -0.723 5.723 10 Si 0.927 3.073 11 H -0.249 1.249 12 H -0.263 1.263 13 H -0.266 1.266 14 C 0.058 3.942 15 F -0.130 7.130 16 C -0.116 4.116 17 C -0.185 4.185 18 C 0.020 3.980 19 N -0.001 5.001 20 O -0.228 6.228 21 O -0.175 6.175 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.301 0.699 28 H 0.123 0.877 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -0.874 -2.642 3.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.005 4.005 3 O -0.218 6.218 4 C -0.001 4.001 5 C 0.060 3.940 6 C -0.436 4.436 7 H 0.124 0.876 8 C -0.162 4.162 9 N -0.341 5.341 10 Si 0.749 3.251 11 H -0.172 1.172 12 H -0.188 1.188 13 H -0.191 1.191 14 C 0.037 3.963 15 F -0.109 7.109 16 C -0.136 4.136 17 C -0.206 4.206 18 C -0.068 4.068 19 N 0.471 4.529 20 O -0.411 6.411 21 O -0.371 6.371 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.791 -0.876 -3.275 3.482 hybrid contribution 0.093 -0.252 -0.439 0.515 sum -0.698 -1.128 -3.715 3.945 Atomic orbital electron populations 1.21668 0.93953 1.01468 1.02943 1.22510 0.94823 0.83477 0.99689 1.85897 1.16318 1.26011 1.93608 1.19243 0.84436 1.08003 0.88444 1.18558 0.89654 0.94260 0.91549 1.20685 1.03017 1.28329 0.91555 0.87559 1.27593 0.93188 0.92481 1.02987 1.69001 1.14228 1.14149 1.36757 0.85905 0.80596 0.80102 0.78503 1.17231 1.18795 1.19131 1.17588 0.90126 1.07500 0.81124 1.91379 1.77599 1.93106 1.48788 1.20114 0.99439 1.03551 0.90485 1.19680 0.90047 1.12243 0.98587 1.20683 0.92262 1.15082 0.78748 1.50598 1.02776 0.95105 1.04445 1.96168 1.67894 1.58679 1.18370 1.96205 0.90733 1.53831 1.96360 0.91715 0.91562 0.92150 0.93075 0.94225 0.88620 0.85860 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.28 37.16 0.38 -1.87 15 2 C 0.07 1.36 6.03 37.16 0.22 1.59 15 3 O -0.30 -6.90 8.02 -39.61 -0.32 -7.22 15 4 C 0.05 1.12 5.93 -36.09 -0.21 0.91 15 5 C 0.06 1.55 5.62 -104.64 -0.59 0.97 15 6 C -0.41 -9.56 8.88 -35.73 -0.32 -9.88 15 7 H 0.11 2.42 8.00 -52.49 -0.42 2.00 15 8 C 0.07 1.48 4.70 -15.14 -0.07 1.40 15 9 N -0.72 -16.05 11.12 56.00 0.62 -15.42 15 10 Si 0.93 15.99 29.68 -169.99 -5.05 10.95 15 11 H -0.25 -4.29 7.11 56.52 0.40 -3.89 15 12 H -0.26 -4.51 7.11 56.52 0.40 -4.11 15 13 H -0.27 -4.45 7.11 56.52 0.40 -4.05 15 14 C 0.06 1.33 6.71 -38.80 -0.26 1.07 15 15 F -0.13 -3.03 14.19 2.25 0.03 -2.99 15 16 C -0.12 -2.40 9.89 -40.04 -0.40 -2.80 15 17 C -0.18 -3.94 9.54 -39.40 -0.38 -4.32 15 18 C 0.02 0.46 6.89 -79.84 -0.55 -0.09 15 19 N 0.00 -0.03 4.98 34.01 0.17 0.14 15 20 O -0.23 -5.34 19.12 -31.57 -0.60 -5.94 15 21 O -0.17 -4.13 16.62 -39.19 -0.65 -4.78 15 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.07 1.05 8.14 -51.92 -0.42 0.63 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.04 0.80 7.43 -51.93 -0.39 0.41 15 27 H 0.30 5.90 8.26 -40.82 -0.34 5.56 15 28 H 0.12 2.18 8.06 -52.49 -0.42 1.75 15 29 H 0.13 2.54 7.53 -52.49 -0.40 2.15 15 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -25.93 271.37 -6.32 -32.25 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -2.45 Total: 1.96 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.17 Total: -13.02 kcal Atomic # 7 Polarization: -16.08 SS G_CDS: 0.79 Total: -15.29 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -1.57 Total: -17.94 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.03 Total: -2.99 kcal Atomic # 14 Polarization: 15.99 SS G_CDS: -5.05 Total: 10.95 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.93 -6.32 -32.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575698043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.990 kcal (2) G-P(sol) polarization free energy of solvation -25.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds