Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46736 * 2 1 4 4 C 1.35293 * 116.99452 * 179.97438 * 3 2 1 5 5 C 1.46671 * 120.58994 * 90.00637 * 4 3 2 6 6 C 1.39396 * 120.66599 * 359.97438 * 5 4 3 7 7 H 1.07995 * 119.99915 * 35.32840 * 6 5 4 8 8 C 1.46717 * 120.00028 * 215.04513 * 6 5 4 9 9 N 1.29431 * 119.99710 * 19.58823 * 8 6 5 10 10 Si 1.86792 * 120.00309 * 199.58481 * 8 6 5 11 11 H 1.48504 * 109.46967 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47013 * 120.00200 * 10 8 6 13 13 H 1.48499 * 109.47303 * 240.00465 * 10 8 6 14 14 C 1.41958 * 118.66601 * 179.72229 * 5 4 3 15 15 F 1.35091 * 120.14285 * 180.26971 * 14 5 4 16 16 C 1.36470 * 119.71903 * 0.25310 * 14 5 4 17 17 C 1.38713 * 121.21912 * 0.02562 * 16 14 5 18 18 C 1.38263 * 121.42584 * 359.97438 * 17 16 14 19 19 N 1.48019 * 119.91982 * 179.97438 * 18 17 16 20 20 O 1.31696 * 120.00146 * 0.02562 * 19 18 17 21 21 O 1.31696 * 119.99664 * 180.02562 * 19 18 17 22 22 H 1.09003 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47282 * 299.99855 * 1 2 3 24 24 H 1.08995 * 109.47327 * 59.99934 * 1 2 3 25 25 H 1.08994 * 109.47513 * 240.00268 * 2 1 3 26 26 H 1.09002 * 109.47045 * 119.99833 * 2 1 3 27 27 H 0.96996 * 119.99894 * 179.97438 * 9 8 6 28 28 H 1.07996 * 119.39381 * 179.97438 * 16 14 5 29 29 H 1.07995 * 119.28949 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3475 1.5246 0.0005 5 6 4.0880 1.6223 -1.2618 6 6 3.4240 1.5339 -2.4842 7 1 2.4323 1.9480 -2.5912 8 6 4.0748 0.8838 -3.6272 9 7 5.0659 0.0744 -3.4331 10 14 3.4729 1.2241 -5.3624 11 1 2.3361 2.1785 -5.3138 12 1 4.5773 1.8108 -6.1633 13 1 3.0270 -0.0459 -5.9897 14 6 5.4937 1.8141 -1.2135 15 9 6.2045 1.9137 -2.3581 16 6 6.1241 1.8980 -0.0060 17 6 5.4164 1.7986 1.1829 18 6 4.0465 1.6115 1.1929 19 7 3.3248 1.5094 2.4812 20 8 3.9873 1.5972 3.6160 21 8 2.0201 1.3307 2.4926 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.4960 -0.3557 -4.1887 28 1 7.1938 2.0435 0.0245 29 1 5.9468 1.8697 2.1209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575698043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = -57.497359 kcal Electronic energy + Delta-G solvation = -19168.576936 eV Core-core repulsion = 15782.479630 eV Total energy + Delta-G solvation = -3386.097306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.35079 -40.93242 -39.25972 -37.92474 -35.88925 -35.33205 -32.71339 -32.42161 -30.90853 -27.28763 -27.02932 -24.09003 -23.20732 -22.75979 -20.33241 -19.27278 -18.95996 -18.49001 -17.56422 -17.13078 -16.98970 -16.65591 -16.07431 -15.84056 -15.56010 -14.94922 -14.30928 -14.21233 -13.79231 -13.54819 -13.28511 -13.03949 -12.84757 -12.65658 -12.40795 -12.30169 -12.21071 -11.97329 -11.80943 -11.75116 -11.36097 -10.73328 -9.88813 -9.79428 -9.12529 -6.70480 -1.56228 0.23302 0.29914 0.51451 1.33365 1.38327 1.51158 2.06072 2.19567 2.60486 3.02552 3.64799 3.89513 4.05675 4.12055 4.26068 4.36842 4.39652 4.47921 4.69441 4.72583 4.99666 5.06599 5.08651 5.19139 5.24667 5.30396 5.66742 5.91034 6.01074 6.12622 6.32004 6.72718 7.80948 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.009165 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.841396 B = 3054.442862 C = 4124.203307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 O -0.316 6.316 4 C 0.030 3.970 5 C 0.042 3.958 6 C -0.434 4.434 7 H 0.101 0.899 8 C 0.038 3.962 9 N -0.750 5.750 10 Si 0.994 3.006 11 H -0.251 1.251 12 H -0.258 1.258 13 H -0.254 1.254 14 C 0.039 3.961 15 F -0.134 7.134 16 C -0.105 4.105 17 C -0.180 4.180 18 C 0.003 3.997 19 N -0.003 5.003 20 O -0.223 6.223 21 O -0.189 6.189 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.029 0.971 27 H 0.313 0.687 28 H 0.159 0.841 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 -1.033 -3.492 3.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.007 4.007 3 O -0.232 6.232 4 C -0.018 4.018 5 C 0.038 3.962 6 C -0.457 4.457 7 H 0.119 0.881 8 C -0.191 4.191 9 N -0.369 5.369 10 Si 0.811 3.189 11 H -0.174 1.174 12 H -0.182 1.182 13 H -0.178 1.178 14 C 0.018 3.982 15 F -0.113 7.113 16 C -0.125 4.125 17 C -0.200 4.200 18 C -0.085 4.085 19 N 0.468 4.532 20 O -0.408 6.408 21 O -0.382 6.382 22 H 0.114 0.886 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.126 0.874 28 H 0.176 0.824 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.637 -1.047 -4.108 4.287 hybrid contribution 0.085 -0.229 -0.123 0.274 sum -0.552 -1.276 -4.231 4.454 Atomic orbital electron populations 1.21679 0.90828 1.03576 1.03079 1.22689 0.97262 0.82082 0.98680 1.85864 1.16067 1.27674 1.93616 1.19445 0.84962 1.08667 0.88740 1.18852 0.90503 0.94927 0.91967 1.20892 1.03268 1.29071 0.92501 0.88095 1.28383 0.93066 0.91621 1.05985 1.68990 1.14929 1.14489 1.38502 0.84950 0.80013 0.80289 0.73599 1.17379 1.18224 1.17771 1.17823 0.90119 1.08469 0.81822 1.91356 1.77534 1.93241 1.49130 1.20416 1.01065 1.01750 0.89253 1.19987 0.89326 1.11011 0.99692 1.20994 0.93117 1.15952 0.78450 1.50684 1.02841 0.95071 1.04622 1.96145 1.67831 1.58283 1.18527 1.96197 0.90902 1.54720 1.96404 0.88605 0.91812 0.91547 0.93939 0.95284 0.87393 0.82362 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 10.28 71.98 0.74 -3.35 15 2 C 0.07 2.64 6.03 71.98 0.43 3.08 15 3 O -0.32 -14.64 8.02 -64.71 -0.52 -15.16 15 4 C 0.03 1.45 5.93 24.53 0.15 1.59 15 5 C 0.04 2.06 5.62 -19.88 -0.11 1.94 15 6 C -0.43 -20.31 8.88 24.77 0.22 -20.09 15 7 H 0.10 4.68 8.00 -2.91 -0.02 4.65 15 8 C 0.04 1.61 4.70 87.26 0.41 2.02 15 9 N -0.75 -32.86 11.12 23.25 0.26 -32.60 15 10 Si 0.99 31.67 29.68 68.60 2.04 33.71 15 11 H -0.25 -7.97 7.11 99.48 0.71 -7.26 15 12 H -0.26 -7.97 7.11 99.48 0.71 -7.26 15 13 H -0.25 -7.53 7.11 99.48 0.71 -6.82 15 14 C 0.04 1.77 6.71 22.78 0.15 1.92 15 15 F -0.13 -6.15 14.19 44.97 0.64 -5.51 15 16 C -0.11 -4.19 9.89 21.97 0.22 -3.98 15 17 C -0.18 -7.42 9.54 22.39 0.21 -7.20 15 18 C 0.00 0.12 6.89 36.44 0.25 0.37 15 19 N 0.00 -0.13 4.98 -46.30 -0.23 -0.36 15 20 O -0.22 -10.21 19.12 3.52 0.07 -10.15 15 21 O -0.19 -8.97 16.62 10.81 0.18 -8.79 15 22 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.06 1.96 8.14 -2.38 -0.02 1.94 15 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.03 1.19 7.43 -2.39 -0.02 1.17 15 27 H 0.31 11.96 8.26 -92.71 -0.77 11.19 15 28 H 0.16 5.12 8.06 -2.91 -0.02 5.09 15 29 H 0.15 5.54 7.53 -2.91 -0.02 5.52 15 Total: -1.00 -54.75 271.37 6.29 -48.46 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.19 Total: 14.10 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 2.67 Total: -23.69 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.03 Total: -32.96 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.27 Total: -34.10 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.64 Total: -5.51 kcal Atomic # 14 Polarization: 31.67 SS G_CDS: 2.04 Total: 33.71 kcal Total: -54.75 6.29 -48.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575698043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.040 kcal (2) G-P(sol) polarization free energy of solvation -54.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds