Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40719 * 120.49292 * 2 1 4 4 C 1.41296 * 119.79170 * 359.97438 * 3 2 1 5 5 H 1.08002 * 120.00389 * 359.72753 * 4 3 2 6 6 C 1.40014 * 119.99854 * 179.44566 * 4 3 2 7 7 N 1.30764 * 120.00130 * 0.27864 * 6 4 3 8 8 Si 1.86798 * 120.00255 * 180.27302 * 6 4 3 9 9 H 1.48504 * 109.46986 * 60.00436 * 8 6 4 10 10 H 1.48498 * 109.47594 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47239 * 300.00706 * 8 6 4 12 12 N 1.33629 * 120.40915 * 179.70579 * 3 2 1 13 13 C 1.31380 * 121.54323 * 0.27828 * 12 3 2 14 14 C 1.39096 * 120.95858 * 0.02562 * 13 12 3 15 15 F 1.35093 * 120.25377 * 179.97438 * 14 13 12 16 16 C 1.38020 * 120.48672 * 180.28292 * 2 1 3 17 17 C 1.50703 * 120.71135 * 359.97438 * 16 2 1 18 18 Cl 1.80302 * 115.55085 * 64.63063 * 17 16 2 19 19 C 1.53002 * 117.49475 * 278.92317 * 17 16 2 20 20 C 1.53005 * 117.49518 * 210.30066 * 17 16 2 21 21 H 1.09001 * 109.47447 * 89.98922 * 1 2 3 22 22 H 1.08997 * 109.47327 * 209.99975 * 1 2 3 23 23 H 1.09007 * 109.46494 * 329.99486 * 1 2 3 24 24 H 0.97005 * 120.00083 * 179.97438 * 7 6 4 25 25 H 1.07996 * 119.52013 * 180.02562 * 13 12 3 26 26 H 1.08995 * 117.50269 * 359.97438 * 19 17 16 27 27 H 1.09002 * 117.49769 * 145.02598 * 19 17 16 28 28 H 1.08992 * 117.49801 * 214.97763 * 20 17 16 29 29 H 1.08994 * 117.49755 * 0.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2210 1.2126 0.0000 4 6 1.5206 2.4397 -0.0005 5 1 0.4406 2.4452 -0.0054 6 6 2.2267 3.6487 0.0112 7 7 3.5343 3.6422 0.0171 8 14 1.3008 5.2711 0.0182 9 1 0.4418 5.3456 1.2273 10 1 2.2713 6.3950 0.0299 11 1 0.4530 5.3625 -1.1975 12 7 3.5573 1.2106 0.0059 13 6 4.2429 0.0899 0.0064 14 6 3.5989 -1.1429 0.0003 15 9 4.3181 -2.2865 0.0004 16 6 2.2072 -1.1894 -0.0059 17 6 1.4811 -2.5100 -0.0118 18 17 0.4951 -2.8487 -1.4829 19 6 0.9568 -3.0338 1.3267 20 6 2.1679 -3.6967 0.6671 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3632 0.8900 0.5140 24 1 4.0234 4.4799 0.0249 25 1 5.3223 0.1265 0.0117 26 1 1.1374 -2.4236 2.2116 27 1 0.0155 -3.5834 1.3182 28 1 2.0233 -4.6823 0.2247 29 1 3.1446 -3.5222 1.1184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584641171.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -14.482572 kcal Electronic energy + Delta-G solvation = -16701.129309 eV Core-core repulsion = 13757.606429 eV Total energy + Delta-G solvation = -2943.522880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.35528 -40.50237 -38.36080 -36.26590 -35.43230 -33.87669 -31.73624 -28.54240 -27.15519 -24.71663 -23.54474 -22.33605 -21.64554 -19.37924 -17.79143 -17.52158 -17.06885 -16.70764 -16.14255 -15.87178 -15.06629 -14.57383 -14.42499 -14.24065 -13.60219 -13.41820 -13.27296 -13.04133 -12.86513 -12.72823 -12.59129 -12.42164 -12.21996 -12.11930 -11.71883 -11.26191 -11.16016 -10.74727 -9.91420 -9.65204 -9.41913 -8.38959 -6.52199 0.49701 0.67424 1.37420 1.43131 1.54909 1.55117 2.21509 2.60194 2.75559 3.44817 3.66398 3.74607 3.80223 3.91055 4.12394 4.50889 4.60708 4.63491 4.69978 4.82175 4.87959 4.96778 5.02405 5.11857 5.24357 5.35317 5.51155 5.72652 6.00507 6.21183 6.63054 6.84788 7.98657 8.37403 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.029093 B = 0.007387 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.203230 B = 3789.405555 C = 4410.525172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.200 4.200 3 C 0.214 3.786 4 C -0.442 4.442 5 H 0.105 0.895 6 C 0.022 3.978 7 N -0.750 5.750 8 Si 0.987 3.013 9 H -0.255 1.255 10 H -0.272 1.272 11 H -0.257 1.257 12 N -0.496 5.496 13 C 0.089 3.911 14 C -0.109 4.109 15 F -0.155 7.155 16 C -0.033 4.033 17 C -0.018 4.018 18 Cl -0.140 7.140 19 C -0.136 4.136 20 C -0.152 4.152 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.282 0.718 25 H 0.143 0.857 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -6.781 1.913 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.205 4.205 3 C 0.090 3.910 4 C -0.473 4.473 5 H 0.123 0.877 6 C -0.201 4.201 7 N -0.372 5.372 8 Si 0.807 3.193 9 H -0.178 1.178 10 H -0.196 1.196 11 H -0.182 1.182 12 N -0.209 5.209 13 C -0.076 4.076 14 C -0.134 4.134 15 F -0.134 7.134 16 C -0.039 4.039 17 C -0.044 4.044 18 Cl -0.113 7.113 19 C -0.173 4.173 20 C -0.189 4.189 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.160 0.840 26 H 0.122 0.878 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.857 -5.894 1.801 7.847 hybrid contribution -0.083 -0.259 -0.339 0.435 sum -4.940 -6.153 1.462 8.025 Atomic orbital electron populations 1.20386 0.89833 1.01847 1.01099 1.20645 0.97572 0.91572 1.10735 1.18986 0.88252 0.93166 0.90620 1.20109 0.95518 0.89674 1.41953 0.87719 1.27069 0.95648 1.04838 0.92528 1.70212 1.08893 1.29808 1.28248 0.85179 0.78638 0.75179 0.80347 1.17846 1.19608 1.18150 1.68764 1.08398 1.25717 1.17987 1.22990 1.00375 0.87297 0.96969 1.18307 0.89360 0.82483 1.23243 1.91241 1.77981 1.48452 1.95740 1.18808 0.90697 0.92818 1.01604 1.22181 1.01177 0.93858 0.87142 1.98665 1.73212 1.95403 1.44042 1.23549 0.99590 1.01549 0.92629 1.23693 0.98330 0.96045 1.00874 0.92660 0.91569 0.91758 0.90725 0.84002 0.87767 0.85092 0.85851 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.83 8.44 71.23 0.60 -2.23 15 2 C -0.20 -9.16 5.95 -19.31 -0.11 -9.28 15 3 C 0.21 11.27 6.55 40.23 0.26 11.54 15 4 C -0.44 -22.31 8.67 23.45 0.20 -22.10 15 5 H 0.10 4.79 6.02 -2.91 -0.02 4.78 15 6 C 0.02 1.06 5.50 85.28 0.47 1.53 15 7 N -0.75 -38.97 11.46 21.84 0.25 -38.72 15 8 Si 0.99 35.86 29.56 68.60 2.03 37.89 15 9 H -0.25 -8.82 7.11 99.48 0.71 -8.12 15 10 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 11 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 12 N -0.50 -27.12 7.85 -188.89 -1.48 -28.61 15 13 C 0.09 4.39 11.17 84.97 0.95 5.34 15 14 C -0.11 -4.98 7.17 22.72 0.16 -4.82 15 15 F -0.15 -6.45 14.30 44.97 0.64 -5.81 15 16 C -0.03 -1.41 5.26 -19.67 -0.10 -1.51 15 17 C -0.02 -0.63 1.66 -11.54 -0.02 -0.64 15 18 Cl -0.14 -4.62 28.35 -2.72 -0.08 -4.70 15 19 C -0.14 -3.65 9.35 30.60 0.29 -3.36 15 20 C -0.15 -4.35 9.15 30.60 0.28 -4.07 15 21 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.07 2.20 6.48 -2.39 -0.02 2.19 15 23 H 0.06 2.39 6.35 -2.38 -0.02 2.37 15 24 H 0.28 13.27 8.29 -92.70 -0.77 12.50 15 25 H 0.14 6.33 8.06 -2.91 -0.02 6.31 15 26 H 0.10 2.86 8.14 -2.39 -0.02 2.84 15 27 H 0.13 2.79 8.14 -2.39 -0.02 2.77 15 28 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 29 H 0.11 3.30 6.17 -2.39 -0.01 3.29 15 Total: -1.00 -58.36 265.65 5.53 -52.83 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.19 Total: 16.72 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 2.98 Total: -29.61 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.23 Total: -67.32 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.64 Total: -5.81 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 17 Polarization: -4.62 SS G_CDS: -0.08 Total: -4.70 kcal Total: -58.36 5.53 -52.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584641171.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.350 kcal (2) G-P(sol) polarization free energy of solvation -58.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds