Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47112 * 300.00178 * 3 2 1 6 6 H 1.48504 * 109.47081 * 59.99631 * 3 2 1 7 7 C 1.38814 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00250 * 157.93536 * 7 2 1 9 9 N 1.36941 * 120.00203 * 337.93972 * 7 2 1 10 10 C 1.46498 * 119.99498 * 324.92801 * 9 7 2 11 11 C 1.53008 * 109.47084 * 269.99532 * 10 9 7 12 12 S 1.81400 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.81403 * 102.99935 * 180.02562 * 12 11 10 14 14 F 1.39909 * 109.46946 * 60.00296 * 13 12 11 15 15 F 1.39896 * 109.46943 * 180.02562 * 13 12 11 16 16 F 1.39892 * 109.47242 * 300.00437 * 13 12 11 17 17 C 1.46489 * 120.00412 * 144.92244 * 9 7 2 18 18 C 1.53001 * 117.50045 * 3.24073 * 17 9 7 19 19 C 1.53003 * 117.50139 * 294.58152 * 17 9 7 20 20 H 0.97004 * 120.00437 * 355.91197 * 1 2 3 21 21 H 1.09004 * 109.47527 * 150.00254 * 10 9 7 22 22 H 1.08995 * 109.47607 * 29.99657 * 10 9 7 23 23 H 1.09011 * 109.46411 * 60.00332 * 11 10 9 24 24 H 1.08995 * 109.47001 * 300.00496 * 11 10 9 25 25 H 1.09003 * 115.55369 * 148.90838 * 17 9 7 26 26 H 1.09006 * 117.49741 * 359.97438 * 18 17 9 27 27 H 1.09000 * 117.50482 * 145.01705 * 18 17 9 28 28 H 1.09006 * 117.49506 * 214.97467 * 19 17 9 29 29 H 1.08994 * 117.49369 * 359.97069 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0309 -1.2366 -0.3508 9 7 1.4007 -2.3445 0.4465 10 6 0.4455 -2.2800 1.5553 11 6 1.1886 -2.4651 2.8800 12 16 0.0060 -2.3845 4.2531 13 6 1.0580 -2.6202 5.7121 14 9 2.0152 -1.6012 5.7663 15 9 0.2692 -2.5816 6.8668 16 9 1.7008 -3.8598 5.6281 17 6 1.7038 -3.6309 -0.1853 18 6 2.7654 -3.6443 -1.2871 19 6 1.2873 -3.8163 -1.6459 20 1 -0.4851 0.8379 0.0599 21 1 -0.2969 -3.0700 1.4419 22 1 -0.0521 -1.3103 1.5503 23 1 1.9310 -1.6750 2.9935 24 1 1.6862 -3.4348 2.8850 25 1 1.6463 -4.5011 0.4687 26 1 3.2380 -2.6957 -1.5421 27 1 3.4061 -4.5232 -1.3581 28 1 0.9562 -4.8085 -1.9527 29 1 0.7873 -2.9812 -2.1364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687803084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -96.777156 kcal Electronic energy + Delta-G solvation = -17036.962663 eV Core-core repulsion = 13673.518493 eV Total energy + Delta-G solvation = -3363.444170 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.02532 -47.66681 -47.60401 -37.26895 -34.02047 -31.62497 -28.85376 -26.32956 -24.73513 -22.21433 -21.42831 -19.92886 -19.04878 -18.47571 -18.42759 -16.56304 -15.71624 -15.28684 -14.65165 -14.55190 -14.49017 -14.15262 -14.04022 -13.76893 -13.76196 -13.33332 -13.11348 -12.47932 -12.16463 -11.62141 -11.24292 -10.89007 -10.82421 -10.42665 -10.28239 -10.13742 -9.93980 -9.77959 -9.42240 -8.66538 -8.05526 -6.83019 -6.01986 -3.59602 0.45902 2.29268 3.22319 3.25361 3.35267 3.36729 4.09617 4.12002 4.29492 4.78530 5.10170 5.13191 5.55626 5.75684 5.78058 6.00712 6.09168 6.21415 6.38886 6.50939 6.66774 6.90475 7.10329 7.36559 7.62091 8.23920 8.89597 9.52367 10.06195 10.94459 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.007268 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.648544 B = 3851.793465 C = 4656.990930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.265 4.265 8 H 0.072 0.928 9 N -0.537 5.537 10 C 0.158 3.842 11 C -0.097 4.097 12 S -0.194 6.194 13 C 0.454 3.546 14 F -0.174 7.174 15 F -0.162 7.162 16 F -0.176 7.176 17 C 0.114 3.886 18 C -0.194 4.194 19 C -0.215 4.215 20 H 0.260 0.740 21 H 0.043 0.957 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -5.516 6.770 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.187 4.187 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.253 5.253 10 C 0.030 3.970 11 C -0.248 4.248 12 S 0.026 5.974 13 C 0.293 3.707 14 F -0.155 7.155 15 F -0.144 7.144 16 F -0.158 7.158 17 C 0.005 3.995 18 C -0.232 4.232 19 C -0.255 4.255 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.132 0.868 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.291 -5.220 6.773 8.556 hybrid contribution 1.862 0.624 0.339 1.993 sum 2.152 -4.595 7.113 8.737 Atomic orbital electron populations 1.70018 1.05670 1.26688 1.48974 1.25199 0.95044 0.99124 0.99300 0.86311 0.79877 0.83495 0.77695 1.19815 1.21315 1.20951 1.19183 0.94968 0.85499 1.39920 0.91056 1.43386 1.49513 1.02029 1.30324 1.20820 0.90727 1.04797 0.80680 1.25122 1.00498 1.05154 0.94052 1.88291 1.16703 1.95060 0.97332 1.23268 0.82172 0.75495 0.89787 1.93291 1.66055 1.59499 1.96704 1.93197 1.73790 1.96210 1.51159 1.93267 1.83177 1.43124 1.96272 1.21263 1.01050 0.89646 0.87524 1.23071 0.91993 1.02092 1.06048 1.23346 0.97355 1.00944 1.03893 0.93027 0.93860 0.86836 0.88868 0.90333 0.89202 0.88316 0.90546 0.90913 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.36 11.33 55.49 0.63 -22.73 15 2 C 0.02 0.40 4.96 -17.43 -0.09 0.31 15 3 Si 0.90 20.30 29.61 -169.99 -5.03 15.27 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 7 C -0.27 -6.63 8.63 -15.06 -0.13 -6.76 15 8 H 0.07 1.79 6.55 -52.49 -0.34 1.44 15 9 N -0.54 -12.26 2.78 -165.66 -0.46 -12.72 15 10 C 0.16 3.41 5.34 -4.04 -0.02 3.39 15 11 C -0.10 -1.81 6.23 37.16 0.23 -1.58 15 12 S -0.19 -3.30 21.77 -107.50 -2.34 -5.64 15 13 C 0.45 7.17 3.51 101.05 0.35 7.53 15 14 F -0.17 -2.85 17.34 2.25 0.04 -2.81 15 15 F -0.16 -2.45 17.36 2.25 0.04 -2.41 15 16 F -0.18 -2.73 17.34 2.25 0.04 -2.70 15 17 C 0.11 2.26 6.56 -67.93 -0.45 1.82 15 18 C -0.19 -3.56 9.80 -26.69 -0.26 -3.82 15 19 C -0.21 -4.09 10.36 -26.69 -0.28 -4.36 15 20 H 0.26 6.71 8.32 -40.82 -0.34 6.37 15 21 H 0.04 0.89 8.07 -51.93 -0.42 0.47 15 22 H 0.11 2.79 5.36 -51.93 -0.28 2.51 15 23 H 0.09 1.84 8.14 -51.92 -0.42 1.42 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.09 1.60 8.14 -51.93 -0.42 1.17 15 26 H 0.10 1.98 6.37 -51.93 -0.33 1.65 15 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 29 H 0.09 2.05 8.14 -51.93 -0.42 1.63 15 LS Contribution 277.77 15.07 4.19 4.19 Total: -1.00 -25.21 277.77 -6.58 -31.79 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.04 Total: 1.25 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.64 Total: -3.49 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.17 Total: -35.45 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.12 Total: -7.92 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.34 Total: -5.64 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.21 -6.58 -31.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687803084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.988 kcal (2) G-P(sol) polarization free energy of solvation -25.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds