Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47112 * 300.00178 * 3 2 1 6 6 H 1.48504 * 109.47081 * 59.99631 * 3 2 1 7 7 C 1.38814 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00250 * 157.93536 * 7 2 1 9 9 N 1.36941 * 120.00203 * 337.93972 * 7 2 1 10 10 C 1.46498 * 119.99498 * 324.92801 * 9 7 2 11 11 C 1.53008 * 109.47084 * 269.99532 * 10 9 7 12 12 S 1.81400 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.81403 * 102.99935 * 180.02562 * 12 11 10 14 14 F 1.39909 * 109.46946 * 60.00296 * 13 12 11 15 15 F 1.39896 * 109.46943 * 180.02562 * 13 12 11 16 16 F 1.39892 * 109.47242 * 300.00437 * 13 12 11 17 17 C 1.46489 * 120.00412 * 144.92244 * 9 7 2 18 18 C 1.53001 * 117.50045 * 3.24073 * 17 9 7 19 19 C 1.53003 * 117.50139 * 294.58152 * 17 9 7 20 20 H 0.97004 * 120.00437 * 355.91197 * 1 2 3 21 21 H 1.09004 * 109.47527 * 150.00254 * 10 9 7 22 22 H 1.08995 * 109.47607 * 29.99657 * 10 9 7 23 23 H 1.09011 * 109.46411 * 60.00332 * 11 10 9 24 24 H 1.08995 * 109.47001 * 300.00496 * 11 10 9 25 25 H 1.09003 * 115.55369 * 148.90838 * 17 9 7 26 26 H 1.09006 * 117.49741 * 359.97438 * 18 17 9 27 27 H 1.09000 * 117.50482 * 145.01705 * 18 17 9 28 28 H 1.09006 * 117.49506 * 214.97467 * 19 17 9 29 29 H 1.08994 * 117.49369 * 359.97069 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0309 -1.2366 -0.3508 9 7 1.4007 -2.3445 0.4465 10 6 0.4455 -2.2800 1.5553 11 6 1.1886 -2.4651 2.8800 12 16 0.0060 -2.3845 4.2531 13 6 1.0580 -2.6202 5.7121 14 9 2.0152 -1.6012 5.7663 15 9 0.2692 -2.5816 6.8668 16 9 1.7008 -3.8598 5.6281 17 6 1.7038 -3.6309 -0.1853 18 6 2.7654 -3.6443 -1.2871 19 6 1.2873 -3.8163 -1.6459 20 1 -0.4851 0.8379 0.0599 21 1 -0.2969 -3.0700 1.4419 22 1 -0.0521 -1.3103 1.5503 23 1 1.9310 -1.6750 2.9935 24 1 1.6862 -3.4348 2.8850 25 1 1.6463 -4.5011 0.4687 26 1 3.2380 -2.6957 -1.5421 27 1 3.4061 -4.5232 -1.3581 28 1 0.9562 -4.8085 -1.9527 29 1 0.7873 -2.9812 -2.1364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687803084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -108.470566 kcal Electronic energy + Delta-G solvation = -17037.469727 eV Core-core repulsion = 13673.518493 eV Total energy + Delta-G solvation = -3363.951234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.32374 -48.94862 -48.90847 -38.88862 -35.67379 -33.42746 -30.54972 -27.67794 -26.53326 -23.82375 -22.92737 -21.59659 -20.41629 -19.77174 -19.72567 -18.34350 -17.35757 -16.92036 -16.16434 -16.00511 -15.77255 -15.73464 -15.33296 -15.06507 -15.05574 -14.89904 -14.71120 -14.13184 -13.78431 -13.19211 -13.02332 -12.65663 -12.44129 -12.15555 -11.93591 -11.67437 -11.57941 -11.40134 -10.92666 -10.53125 -9.46508 -8.63938 -7.89006 -5.52162 -0.89712 0.81239 1.44000 1.49406 1.57129 1.91892 2.46421 2.78585 2.81056 3.11179 3.37598 3.48765 4.02649 4.16956 4.30610 4.49199 4.54209 4.61537 4.95368 4.99895 5.07578 5.35021 5.54692 5.59257 5.70975 6.38489 7.05614 7.73711 8.23271 9.03962 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.007268 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.648544 B = 3851.793465 C = 4656.990930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.030 4.030 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.557 5.557 10 C 0.163 3.837 11 C -0.087 4.087 12 S -0.182 6.182 13 C 0.466 3.534 14 F -0.175 7.175 15 F -0.153 7.153 16 F -0.170 7.170 17 C 0.096 3.904 18 C -0.180 4.180 19 C -0.214 4.214 20 H 0.254 0.746 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -6.875 7.798 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.228 4.228 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.274 5.274 10 C 0.035 3.965 11 C -0.238 4.238 12 S 0.038 5.962 13 C 0.305 3.695 14 F -0.157 7.157 15 F -0.135 7.135 16 F -0.152 7.152 17 C -0.012 4.012 18 C -0.218 4.218 19 C -0.254 4.254 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.109 -6.588 7.787 10.260 hybrid contribution 1.576 0.940 0.134 1.840 sum 2.685 -5.649 7.921 10.093 Atomic orbital electron populations 1.70127 1.06683 1.26679 1.51493 1.25763 0.95570 1.01405 1.00106 0.85506 0.79164 0.80625 0.76987 1.19116 1.21928 1.21332 1.19298 0.94683 0.86459 1.39112 0.91589 1.43534 1.49472 1.02536 1.31834 1.20545 0.90707 1.03209 0.82029 1.24653 0.99666 1.05629 0.93891 1.88183 1.15362 1.95141 0.97542 1.22808 0.81828 0.75655 0.89254 1.93301 1.66044 1.59665 1.96679 1.93223 1.73626 1.96185 1.50421 1.93289 1.82991 1.42686 1.96226 1.21607 1.02134 0.89317 0.88156 1.23069 0.91823 1.02465 1.04438 1.23266 0.97864 1.01118 1.03171 0.93611 0.93445 0.89909 0.90186 0.88530 0.86508 0.90568 0.86987 0.87850 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.96 11.33 21.65 0.25 -49.71 15 2 C -0.03 -1.56 4.96 84.86 0.42 -1.13 15 3 Si 0.95 42.47 29.61 68.60 2.03 44.50 15 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 15 6 H -0.29 -12.85 7.11 99.48 0.71 -12.15 15 7 C -0.27 -13.38 8.63 84.03 0.73 -12.66 15 8 H 0.07 3.34 6.55 -2.91 -0.02 3.32 15 9 N -0.56 -25.31 2.78 -678.03 -1.88 -27.20 15 10 C 0.16 6.99 5.34 86.38 0.46 7.45 15 11 C -0.09 -3.13 6.23 71.98 0.45 -2.68 15 12 S -0.18 -5.86 21.77 -56.49 -1.23 -7.08 15 13 C 0.47 13.52 3.51 113.37 0.40 13.92 15 14 F -0.17 -5.35 17.34 44.97 0.78 -4.57 15 15 F -0.15 -4.21 17.36 44.97 0.78 -3.43 15 16 F -0.17 -4.76 17.34 44.97 0.78 -3.98 15 17 C 0.10 3.64 6.56 45.00 0.30 3.94 15 18 C -0.18 -6.28 9.80 30.62 0.30 -5.98 15 19 C -0.21 -7.88 10.36 30.62 0.32 -7.56 15 20 H 0.25 13.61 8.32 -92.71 -0.77 12.84 15 21 H 0.05 1.93 8.07 -2.39 -0.02 1.91 15 22 H 0.08 4.14 5.36 -2.39 -0.01 4.13 15 23 H 0.08 3.09 8.14 -2.38 -0.02 3.07 15 24 H 0.10 3.11 8.14 -2.39 -0.02 3.09 15 25 H 0.12 3.79 8.14 -2.39 -0.02 3.77 15 26 H 0.08 3.02 6.37 -2.38 -0.02 3.00 15 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 15 28 H 0.10 3.14 8.14 -2.38 -0.02 3.12 15 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -53.81 277.77 6.04 -47.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.17 Total: 8.40 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 3.37 Total: -4.71 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.64 Total: -76.91 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 2.34 Total: -11.97 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.23 Total: -7.08 kcal Total: -53.81 6.04 -47.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687803084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.693 kcal (2) G-P(sol) polarization free energy of solvation -53.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds