Wall clock time and date at job start Mon Mar 30 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86806 * 119.99997 * 2 1 4 4 H 1.48498 * 109.46772 * 274.98138 * 3 2 1 5 5 H 1.48494 * 109.47126 * 34.97983 * 3 2 1 6 6 H 1.48496 * 109.46955 * 154.98347 * 3 2 1 7 7 C 1.39895 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99675 * 197.73494 * 7 2 1 9 9 C 1.41159 * 120.00039 * 17.73305 * 7 2 1 10 10 C 1.40861 * 120.16086 * 25.07261 * 9 7 2 11 11 C 1.36382 * 119.82187 * 180.23060 * 10 9 7 12 12 C 1.39471 * 120.16971 * 359.48118 * 11 10 9 13 13 N 1.39257 * 119.83312 * 180.27279 * 12 11 10 14 14 C 1.34772 * 120.00043 * 324.04510 * 13 12 11 15 15 O 1.21498 * 120.00181 * 5.17725 * 14 13 12 16 16 O 1.34651 * 119.99804 * 185.18611 * 14 13 12 17 17 C 1.45206 * 116.99610 * 179.97438 * 16 14 13 18 18 Cl 1.80300 * 109.47265 * 74.99874 * 17 16 14 19 19 C 1.39479 * 120.33291 * 0.25074 * 12 11 10 20 20 C 1.36369 * 120.16892 * 0.02562 * 19 12 11 21 21 H 0.97006 * 119.99638 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.09387 * 359.97438 * 10 9 7 23 23 H 1.08005 * 119.91299 * 179.74951 * 11 10 9 24 24 H 0.97007 * 120.00079 * 144.03792 * 13 12 11 25 25 H 1.09009 * 109.46753 * 194.99502 * 17 16 14 26 26 H 1.08997 * 109.47169 * 314.99088 * 17 16 14 27 27 H 1.08002 * 119.91206 * 180.02562 * 19 12 11 28 28 H 1.08007 * 120.08555 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4969 2.6200 0.8026 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2115 0.0005 8 1 3.0498 -1.2336 0.2855 9 6 1.3527 -2.4051 -0.3713 10 6 0.2276 -2.3606 -1.2176 11 6 -0.4033 -3.5176 -1.5686 12 6 0.0694 -4.7435 -1.1007 13 7 -0.5768 -5.9211 -1.4681 14 6 -1.9173 -5.9395 -1.6057 15 8 -2.5529 -4.9092 -1.5017 16 8 -2.5523 -7.0997 -1.8582 17 6 -3.9970 -7.0445 -1.9937 18 17 -4.4238 -6.3249 -3.5908 19 6 1.1863 -4.7960 -0.2669 20 6 1.8243 -3.6470 0.0973 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1371 -1.4124 -1.5842 23 1 -1.2686 -3.4848 -2.2141 24 1 -0.0620 -6.7282 -1.6251 25 1 -4.4068 -8.0525 -1.9282 26 1 -4.4136 -6.4303 -1.1954 27 1 1.5468 -5.7490 0.0912 28 1 2.6893 -3.6893 0.7427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692874276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:59 Heat of formation + Delta-G solvation = -65.076376 kcal Electronic energy + Delta-G solvation = -16035.932567 eV Core-core repulsion = 13077.842985 eV Total energy + Delta-G solvation = -2958.089582 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35386 -38.02352 -36.40731 -35.67934 -34.57313 -33.04418 -29.56304 -29.18274 -27.21341 -24.91544 -21.97558 -21.31216 -20.19802 -18.45759 -17.36881 -17.01137 -16.51949 -15.85679 -15.16270 -14.46111 -14.11917 -13.92827 -13.15948 -12.88848 -12.73099 -12.15773 -11.92760 -11.62229 -11.23063 -11.10492 -11.03150 -10.90757 -10.56833 -10.54319 -10.23188 -9.99981 -9.67474 -9.30471 -8.80037 -7.57874 -7.11489 -6.79168 -4.34901 1.90043 2.28378 2.63553 3.01070 3.05624 3.09510 3.09903 3.41815 3.90401 4.50152 4.58987 4.67914 4.89446 5.64464 6.06317 6.12038 6.38814 6.70727 6.93176 6.99213 7.10386 7.21806 7.55007 7.59530 7.88811 8.01158 8.10763 8.23756 8.58051 8.73103 8.83548 8.95303 10.13981 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.004747 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.407090 B = 5897.408636 C = 6484.369726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.109 3.891 10 C -0.158 4.158 11 C -0.082 4.082 12 C -0.007 4.007 13 N -0.622 5.622 14 C 0.628 3.372 15 O -0.544 6.544 16 O -0.366 6.366 17 C 0.163 3.837 18 Cl -0.179 7.179 19 C -0.095 4.095 20 C -0.217 4.217 21 H 0.282 0.718 22 H 0.120 0.880 23 H 0.109 0.891 24 H 0.402 0.598 25 H 0.141 0.859 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -10.348 -2.722 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.178 4.178 11 C -0.102 4.102 12 C -0.098 4.098 13 N -0.272 5.272 14 C 0.380 3.620 15 O -0.430 6.430 16 O -0.281 6.281 17 C 0.061 3.939 18 Cl -0.153 7.153 19 C -0.116 4.116 20 C -0.237 4.237 21 H 0.093 0.907 22 H 0.138 0.862 23 H 0.127 0.873 24 H 0.236 0.764 25 H 0.158 0.842 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.964 -9.649 -2.757 11.196 hybrid contribution 0.348 0.371 -0.025 0.509 sum -4.615 -9.279 -2.782 10.730 Atomic orbital electron populations 1.69866 1.07598 1.29449 1.33989 1.25968 0.94750 1.01484 0.92292 0.86274 0.80549 0.80568 0.79206 1.19270 1.20251 1.18521 1.19595 0.98152 0.91246 1.39566 0.90205 1.17700 0.91058 0.92110 0.88517 1.20987 0.99123 0.96751 1.00922 1.20579 0.98898 0.91436 0.99272 1.16975 0.99808 0.83616 1.09371 1.41560 1.02173 1.13616 1.69814 1.18308 0.83879 0.81756 0.78009 1.91047 1.65648 1.31466 1.54813 1.86414 1.22128 1.35347 1.84198 1.25931 0.78052 1.02449 0.87439 1.98773 1.92787 1.87028 1.36734 1.20030 0.96604 0.97397 0.97535 1.20543 1.04036 0.92319 1.06780 0.90664 0.86174 0.87339 0.76361 0.84189 0.87392 0.88952 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.42 10.98 55.55 0.61 -19.81 15 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 15 3 Si 0.91 18.46 29.60 -169.99 -5.03 13.43 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.46 -11.90 9.03 -37.85 -0.34 -12.24 15 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 15 9 C 0.11 2.87 5.57 -106.80 -0.59 2.28 15 10 C -0.16 -4.18 8.64 -39.26 -0.34 -4.52 15 11 C -0.08 -2.03 8.61 -39.79 -0.34 -2.37 15 12 C -0.01 -0.15 6.30 -83.57 -0.53 -0.68 15 13 N -0.62 -11.33 5.31 -14.14 -0.08 -11.41 15 14 C 0.63 11.62 8.39 54.05 0.45 12.08 15 15 O -0.54 -11.92 13.05 -19.27 -0.25 -12.17 15 16 O -0.37 -5.28 10.42 -40.35 -0.42 -5.70 15 17 C 0.16 1.85 7.38 101.05 0.75 2.59 15 18 Cl -0.18 -2.44 29.00 -51.86 -1.50 -3.94 15 19 C -0.10 -2.05 9.90 -39.79 -0.39 -2.45 15 20 C -0.22 -5.14 9.74 -39.26 -0.38 -5.52 15 21 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 22 H 0.12 3.31 6.19 -52.48 -0.32 2.98 15 23 H 0.11 2.73 6.24 -52.48 -0.33 2.40 15 24 H 0.40 5.82 8.93 -40.82 -0.36 5.45 15 25 H 0.14 0.94 8.14 -51.92 -0.42 0.52 15 26 H 0.11 1.23 7.70 -51.93 -0.40 0.83 15 27 H 0.09 1.67 8.06 -52.49 -0.42 1.24 15 28 H 0.10 2.15 8.06 -52.48 -0.42 1.73 15 LS Contribution 267.89 15.07 4.04 4.04 Total: -1.00 -29.81 267.89 -6.68 -36.49 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.23 Total: 8.16 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.81 Total: -9.09 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.53 Total: -31.21 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.67 Total: -17.87 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -1.50 Total: -3.94 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.81 -6.68 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692874276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.589 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds