Wall clock time and date at job start Mon Mar 30 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47476 * 299.99870 * 3 2 1 6 6 H 1.48505 * 109.47060 * 59.99957 * 3 2 1 7 7 C 1.39927 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99731 * 185.54362 * 7 2 1 9 9 C 1.41409 * 120.00338 * 5.54876 * 7 2 1 10 10 C 1.40770 * 120.20963 * 34.43620 * 9 7 2 11 11 C 1.37642 * 119.88494 * 180.27711 * 10 9 7 12 12 C 1.38539 * 120.31748 * 359.47513 * 11 10 9 13 13 C 1.39240 * 120.42785 * 0.25599 * 12 11 10 14 14 N 1.39966 * 119.94488 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99813 * 145.42366 * 14 13 12 16 16 O 1.21508 * 120.00183 * 354.28784 * 15 14 13 17 17 O 1.34651 * 119.99958 * 174.28557 * 15 14 13 18 18 C 1.45196 * 117.00117 * 180.02562 * 17 15 14 19 19 Cl 1.80297 * 109.47090 * 75.00119 * 18 17 15 20 20 C 1.38278 * 120.10842 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.05975 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.84190 * 179.75629 * 11 10 9 24 24 H 1.07997 * 119.78333 * 180.23318 * 12 11 10 25 25 H 0.96998 * 119.99649 * 325.42505 * 14 13 12 26 26 H 1.09005 * 109.47255 * 195.00226 * 18 17 15 27 27 H 1.08996 * 109.47144 * 314.99897 * 18 17 15 28 28 H 1.08001 * 120.15988 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0843 -1.2138 0.0909 9 6 1.3060 -2.4337 -0.1173 10 6 0.1451 -2.5100 -0.9098 11 6 -0.5362 -3.7013 -1.0153 12 6 -0.0789 -4.8294 -0.3537 13 6 1.0710 -4.7701 0.4292 14 7 1.5237 -5.9158 1.0936 15 6 2.8458 -6.1277 1.2470 16 8 3.6461 -5.3805 0.7200 17 8 3.2800 -7.1675 1.9842 18 6 4.7171 -7.3343 2.1066 19 17 5.3706 -6.0993 3.2460 20 6 1.7660 -3.5810 0.5521 21 1 -0.4851 0.8400 -0.0004 22 1 -0.2128 -1.6343 -1.4310 23 1 -1.4290 -3.7581 -1.6203 24 1 -0.6181 -5.7606 -0.4455 25 1 0.8858 -6.5573 1.4437 26 1 4.9360 -8.3319 2.4875 27 1 5.1821 -7.2087 1.1288 28 1 2.6578 -3.5340 1.1595 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692900675.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:08 Heat of formation + Delta-G solvation = -66.044090 kcal Electronic energy + Delta-G solvation = -16140.904270 eV Core-core repulsion = 13182.772725 eV Total energy + Delta-G solvation = -2958.131545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45236 -38.02353 -36.40549 -35.69486 -34.57369 -33.06850 -29.84965 -28.63818 -26.86842 -25.30212 -22.35279 -21.02577 -20.26871 -18.57204 -17.67245 -16.66043 -16.57422 -15.48214 -14.82142 -14.61199 -14.52393 -14.05720 -13.18963 -12.96895 -12.85505 -12.26361 -11.76128 -11.38360 -11.15233 -11.04324 -11.02661 -11.01083 -10.58155 -10.45517 -10.41991 -9.82338 -9.59773 -9.31743 -9.08349 -7.42811 -7.01121 -6.64250 -4.37675 1.86759 2.19534 2.64605 2.82213 3.12450 3.16215 3.19669 3.38747 4.00449 4.38055 4.62557 4.68908 4.83929 5.61172 6.01208 6.17742 6.30239 6.59319 6.92154 6.95841 7.04178 7.25863 7.44903 7.64729 7.86610 8.02253 8.08488 8.21010 8.60132 8.67779 8.92219 8.95535 10.30609 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.006083 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.129251 B = 4601.871240 C = 5699.310428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.122 3.878 10 C -0.155 4.155 11 C -0.096 4.096 12 C -0.246 4.246 13 C 0.155 3.845 14 N -0.640 5.640 15 C 0.636 3.364 16 O -0.533 6.533 17 O -0.364 6.364 18 C 0.161 3.839 19 Cl -0.173 7.173 20 C -0.200 4.200 21 H 0.278 0.722 22 H 0.120 0.880 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.406 0.594 26 H 0.142 0.858 27 H 0.108 0.892 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 -11.304 3.041 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.119 3.881 10 C -0.174 4.174 11 C -0.115 4.115 12 C -0.268 4.268 13 C 0.065 3.935 14 N -0.290 5.290 15 C 0.388 3.612 16 O -0.418 6.418 17 O -0.279 6.279 18 C 0.059 3.941 19 Cl -0.148 7.148 20 C -0.222 4.222 21 H 0.089 0.911 22 H 0.138 0.862 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.241 0.759 26 H 0.159 0.841 27 H 0.126 0.874 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.308 -10.708 2.913 11.904 hybrid contribution 0.098 0.438 0.331 0.558 sum 4.406 -10.270 3.244 11.636 Atomic orbital electron populations 1.69774 1.07293 1.28811 1.37778 1.25847 0.94881 1.01077 0.92442 0.86197 0.80831 0.80902 0.78385 1.18484 1.19878 1.20048 1.19576 0.95059 0.89949 1.44731 0.90356 1.17495 0.91303 0.91576 0.87767 1.21411 0.98424 0.96324 1.01276 1.20498 0.98596 0.93159 0.99238 1.20059 1.00903 0.98455 1.07344 1.17270 0.96380 0.83624 0.96272 1.42054 1.03187 1.25099 1.58647 1.18181 0.84565 0.79904 0.78506 1.91098 1.53803 1.46720 1.50178 1.86416 1.25615 1.48331 1.67526 1.25939 0.77287 0.93958 0.96895 1.98784 1.86377 1.62571 1.67043 1.21143 1.03435 0.91811 1.05786 0.91128 0.86236 0.88630 0.88865 0.75905 0.84059 0.87357 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.21 10.97 55.55 0.61 -20.60 15 2 C 0.07 1.88 5.31 -17.35 -0.09 1.79 15 3 Si 0.91 19.38 29.56 -169.99 -5.03 14.35 15 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 7 C -0.46 -12.70 9.04 -37.74 -0.34 -13.04 15 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 15 9 C 0.12 3.31 5.50 -106.85 -0.59 2.72 15 10 C -0.15 -3.99 8.62 -38.84 -0.33 -4.32 15 11 C -0.10 -2.17 10.02 -39.69 -0.40 -2.57 15 12 C -0.25 -5.25 9.97 -39.10 -0.39 -5.64 15 13 C 0.15 3.46 6.25 -83.76 -0.52 2.93 15 14 N -0.64 -11.62 5.34 -14.31 -0.08 -11.69 15 15 C 0.64 11.66 8.27 54.05 0.45 12.11 15 16 O -0.53 -11.61 13.41 -19.28 -0.26 -11.87 15 17 O -0.36 -5.17 10.42 -40.36 -0.42 -5.59 15 18 C 0.16 1.79 7.38 101.05 0.75 2.53 15 19 Cl -0.17 -2.42 29.00 -51.86 -1.50 -3.92 15 20 C -0.20 -5.15 8.39 -38.69 -0.32 -5.48 15 21 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 22 H 0.12 3.17 6.48 -52.48 -0.34 2.83 15 23 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 24 H 0.09 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.41 5.82 8.93 -40.82 -0.36 5.45 15 26 H 0.14 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.11 1.17 7.70 -51.93 -0.40 0.77 15 28 H 0.11 2.91 6.51 -52.49 -0.34 2.57 15 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -30.45 268.80 -6.68 -37.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.26 Total: 7.10 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.80 Total: -8.97 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.53 Total: -32.29 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.68 Total: -17.45 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.92 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.45 -6.68 -37.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692900675.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.910 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds