Wall clock time and date at job start Mon Mar 30 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47476 * 299.99870 * 3 2 1 6 6 H 1.48505 * 109.47060 * 59.99957 * 3 2 1 7 7 C 1.39927 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99731 * 185.54362 * 7 2 1 9 9 C 1.41409 * 120.00338 * 5.54876 * 7 2 1 10 10 C 1.40770 * 120.20963 * 34.43620 * 9 7 2 11 11 C 1.37642 * 119.88494 * 180.27711 * 10 9 7 12 12 C 1.38539 * 120.31748 * 359.47513 * 11 10 9 13 13 C 1.39240 * 120.42785 * 0.25599 * 12 11 10 14 14 N 1.39966 * 119.94488 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99813 * 145.42366 * 14 13 12 16 16 O 1.21508 * 120.00183 * 354.28784 * 15 14 13 17 17 O 1.34651 * 119.99958 * 174.28557 * 15 14 13 18 18 C 1.45196 * 117.00117 * 180.02562 * 17 15 14 19 19 Cl 1.80297 * 109.47090 * 75.00119 * 18 17 15 20 20 C 1.38278 * 120.10842 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00464 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.05975 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.84190 * 179.75629 * 11 10 9 24 24 H 1.07997 * 119.78333 * 180.23318 * 12 11 10 25 25 H 0.96998 * 119.99649 * 325.42505 * 14 13 12 26 26 H 1.09005 * 109.47255 * 195.00226 * 18 17 15 27 27 H 1.08996 * 109.47144 * 314.99897 * 18 17 15 28 28 H 1.08001 * 120.15988 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0843 -1.2138 0.0909 9 6 1.3060 -2.4337 -0.1173 10 6 0.1451 -2.5100 -0.9098 11 6 -0.5362 -3.7013 -1.0153 12 6 -0.0789 -4.8294 -0.3537 13 6 1.0710 -4.7701 0.4292 14 7 1.5237 -5.9158 1.0936 15 6 2.8458 -6.1277 1.2470 16 8 3.6461 -5.3805 0.7200 17 8 3.2800 -7.1675 1.9842 18 6 4.7171 -7.3343 2.1066 19 17 5.3706 -6.0993 3.2460 20 6 1.7660 -3.5810 0.5521 21 1 -0.4851 0.8400 -0.0004 22 1 -0.2128 -1.6343 -1.4310 23 1 -1.4290 -3.7581 -1.6203 24 1 -0.6181 -5.7606 -0.4455 25 1 0.8858 -6.5573 1.4437 26 1 4.9360 -8.3319 2.4875 27 1 5.1821 -7.2087 1.1288 28 1 2.6578 -3.5340 1.1595 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692900675.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:08 Heat of formation + Delta-G solvation = -86.051318 kcal Electronic energy + Delta-G solvation = -16141.771849 eV Core-core repulsion = 13182.772725 eV Total energy + Delta-G solvation = -2958.999123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88964 -39.66807 -37.83745 -36.81460 -36.28167 -34.89162 -31.75420 -30.30432 -28.03217 -27.22829 -23.91376 -22.84988 -21.92338 -20.07457 -19.40879 -18.07801 -17.86336 -17.30953 -16.51668 -16.43821 -15.75613 -15.40250 -14.86881 -14.71201 -14.12050 -13.99062 -13.59726 -13.06929 -12.94945 -12.84852 -12.42741 -12.21614 -12.17305 -12.07357 -11.66470 -11.53433 -11.35850 -11.17583 -10.88691 -9.33981 -8.82667 -8.54742 -6.40485 0.63792 0.95524 0.99129 1.06664 1.37451 1.46298 1.52221 1.83138 2.23405 2.77520 3.09705 3.67048 3.79113 4.02337 4.44417 4.58919 4.69617 4.97626 5.09140 5.09450 5.17472 5.32010 5.68329 5.79171 6.03003 6.10696 6.31573 6.41743 6.67531 6.93759 6.98810 7.21636 8.41341 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.006083 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.129251 B = 4601.871240 C = 5699.310428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.090 3.910 10 C -0.178 4.178 11 C -0.093 4.093 12 C -0.230 4.230 13 C 0.163 3.837 14 N -0.631 5.631 15 C 0.639 3.361 16 O -0.571 6.571 17 O -0.349 6.349 18 C 0.156 3.844 19 Cl -0.200 7.200 20 C -0.225 4.225 21 H 0.287 0.713 22 H 0.103 0.897 23 H 0.130 0.870 24 H 0.140 0.860 25 H 0.427 0.573 26 H 0.198 0.802 27 H 0.112 0.888 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -13.022 3.101 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.190 1.190 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.250 4.250 13 C 0.071 3.929 14 N -0.283 5.283 15 C 0.392 3.608 16 O -0.459 6.459 17 O -0.263 6.263 18 C 0.056 3.944 19 Cl -0.175 7.175 20 C -0.247 4.247 21 H 0.097 0.903 22 H 0.122 0.878 23 H 0.148 0.852 24 H 0.157 0.843 25 H 0.266 0.734 26 H 0.215 0.785 27 H 0.130 0.870 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.567 -12.488 2.998 13.329 hybrid contribution 0.317 0.730 0.325 0.860 sum 3.884 -11.758 3.322 12.821 Atomic orbital electron populations 1.69814 1.08378 1.30128 1.38074 1.26607 0.95755 1.03915 0.91465 0.85163 0.78918 0.76489 0.79118 1.19073 1.18372 1.18979 1.19711 0.94552 0.91662 1.47773 0.92054 1.17794 0.92447 0.92178 0.88793 1.21365 0.98940 0.97354 1.02131 1.20887 0.99056 0.92243 0.98959 1.20521 0.99915 0.99732 1.04881 1.17285 0.96032 0.83802 0.95797 1.41824 1.03909 1.24313 1.58277 1.18275 0.84234 0.80127 0.78145 1.91091 1.54842 1.48294 1.51682 1.86446 1.27609 1.46158 1.66073 1.26677 0.75326 0.95367 0.97043 1.98788 1.86655 1.64111 1.67906 1.21070 1.03592 0.93299 1.06701 0.90294 0.87848 0.85220 0.84255 0.73366 0.78479 0.87023 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.84 10.97 21.82 0.24 -44.60 15 2 C 0.04 1.87 5.31 85.25 0.45 2.32 15 3 Si 0.98 40.68 29.56 68.60 2.03 42.71 15 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 7 C -0.51 -29.31 9.04 23.46 0.21 -29.10 15 8 H 0.06 3.59 7.85 -2.91 -0.02 3.57 15 9 C 0.09 5.12 5.50 -21.31 -0.12 5.01 15 10 C -0.18 -9.33 8.62 22.75 0.20 -9.13 15 11 C -0.09 -4.03 10.02 22.20 0.22 -3.81 15 12 C -0.23 -9.09 9.97 22.58 0.23 -8.86 15 13 C 0.16 7.07 6.25 38.09 0.24 7.31 15 14 N -0.63 -21.59 5.34 -429.61 -2.30 -23.89 15 15 C 0.64 22.59 8.27 129.79 1.07 23.66 15 16 O -0.57 -25.01 13.41 19.81 0.27 -24.75 15 17 O -0.35 -9.04 10.42 -55.60 -0.58 -9.62 15 18 C 0.16 3.08 7.38 113.37 0.84 3.91 15 19 Cl -0.20 -5.42 29.00 -2.72 -0.08 -5.50 15 20 C -0.22 -11.91 8.39 22.85 0.19 -11.71 15 21 H 0.29 13.83 8.30 -92.71 -0.77 13.06 15 22 H 0.10 5.66 6.48 -2.91 -0.02 5.64 15 23 H 0.13 4.69 8.06 -2.91 -0.02 4.67 15 24 H 0.14 4.26 8.06 -2.91 -0.02 4.24 15 25 H 0.43 10.80 8.93 -92.71 -0.83 9.97 15 26 H 0.20 1.68 8.14 -2.38 -0.02 1.66 15 27 H 0.11 2.20 7.70 -2.39 -0.02 2.18 15 28 H 0.09 4.86 6.51 -2.91 -0.02 4.84 15 Total: -1.00 -69.25 268.80 3.49 -65.76 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.38 Total: 20.28 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.53 Total: -20.40 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -2.06 Total: -68.49 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.31 Total: -34.36 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 17 Polarization: -5.42 SS G_CDS: -0.08 Total: -5.50 kcal Total: -69.25 3.49 -65.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692900675.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.287 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds