Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46752 * 2 1 4 4 C 1.52994 * 109.47363 * 239.99856 * 2 1 3 5 5 C 1.50707 * 109.47171 * 174.99683 * 4 2 1 6 6 H 1.07999 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47333 * 60.00035 * 9 7 5 11 11 H 1.48501 * 109.47294 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46969 * 300.00270 * 9 7 5 13 13 O 1.42902 * 109.47201 * 119.99435 * 2 1 3 14 14 C 1.35006 * 116.99859 * 270.00595 * 13 2 1 15 15 O 1.21733 * 120.00105 * 359.97438 * 14 13 2 16 16 C 1.41261 * 119.99719 * 179.72434 * 14 13 2 17 17 S 1.75813 * 125.48800 * 359.96814 * 16 14 13 18 18 C 1.70558 * 91.69642 * 179.91336 * 17 16 14 19 19 C 1.33542 * 111.23627 * 0.35625 * 18 17 16 20 20 C 1.37627 * 125.48654 * 180.27373 * 16 14 13 21 21 N 1.39150 * 123.52604 * 0.03830 * 20 16 14 22 22 H 1.08993 * 109.47532 * 300.00315 * 1 2 3 23 23 H 1.08999 * 109.47157 * 60.00605 * 1 2 3 24 24 H 1.09006 * 109.46629 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46939 * 294.99241 * 4 2 1 26 26 H 1.08998 * 109.47154 * 54.99706 * 4 2 1 27 27 H 0.96996 * 119.99969 * 179.97438 * 8 7 5 28 28 H 1.08007 * 124.38156 * 180.02562 * 18 17 16 29 29 H 1.08007 * 122.45120 * 179.74474 * 19 18 17 30 30 H 0.96999 * 119.99995 * 359.97438 * 21 20 16 31 31 H 0.97004 * 119.99659 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2306 -1.1934 -2.3576 8 7 3.5767 -1.8378 -3.2993 9 14 6.0923 -1.0621 -2.4359 10 1 6.6840 -1.6879 -1.2262 11 1 6.5874 -1.7620 -3.6484 12 1 6.4855 0.3687 -2.4956 13 8 2.0064 -0.6735 1.1669 14 6 2.2106 0.0794 2.2687 15 8 1.9899 1.2762 2.2376 16 6 2.6752 -0.5224 3.4592 17 16 3.0321 -2.2314 3.6670 18 6 3.4868 -1.9906 5.2931 19 6 3.3655 -0.7080 5.6445 20 6 2.9159 0.1336 4.6449 21 7 2.7255 1.5009 4.8191 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.7518 -1.7715 -1.2054 26 1 1.6054 -0.2618 -2.1369 27 1 4.0611 -2.2445 -4.0347 28 1 3.8238 -2.7750 5.9548 29 1 3.6019 -0.3542 6.6372 30 1 2.4072 2.0442 4.0813 31 1 2.9119 1.9109 5.6782 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820600.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -66.578445 kcal Electronic energy + Delta-G solvation = -16604.877940 eV Core-core repulsion = 13784.600025 eV Total energy + Delta-G solvation = -2820.277915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03455 -38.35576 -35.97234 -33.32689 -33.00317 -31.53969 -29.34609 -27.38161 -24.58612 -23.35619 -22.09452 -19.88477 -19.19664 -18.60156 -16.73737 -16.38885 -16.27145 -15.37105 -15.14576 -14.67722 -14.25449 -13.83429 -13.52824 -13.02437 -12.89406 -12.27532 -12.07390 -11.84005 -11.50588 -11.34417 -10.79199 -10.73444 -10.67602 -10.58547 -10.28792 -9.97869 -9.75651 -9.26364 -8.98173 -8.69053 -8.34012 -7.43240 -5.97425 -3.98504 0.68242 1.75609 2.17067 2.50274 3.37423 3.40538 3.44773 3.49864 3.64562 3.98453 4.49859 4.90817 5.19868 5.38885 5.46604 5.76705 5.81515 5.90062 5.97896 6.03557 6.17864 6.42403 6.66453 6.83499 7.20130 7.34878 7.57605 7.73632 7.85560 7.99297 8.38813 8.54633 9.04580 9.64391 11.13982 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.006650 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.768798 B = 4209.307997 C = 4749.084268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.072 0.928 4 C 0.025 3.975 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 O -0.327 6.327 14 C 0.546 3.454 15 O -0.542 6.542 16 C -0.368 4.368 17 S 0.256 5.744 18 C -0.203 4.203 19 C -0.204 4.204 20 C 0.280 3.720 21 N -0.839 5.839 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.261 0.739 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.418 0.582 31 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 0.819 17.711 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.012 4.012 5 C -0.552 4.552 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 O -0.242 6.242 14 C 0.396 3.604 15 O -0.437 6.437 16 C -0.493 4.493 17 S 0.521 5.479 18 C -0.342 4.342 19 C -0.241 4.241 20 C 0.158 3.842 21 N -0.383 5.383 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.187 0.813 29 H 0.160 0.840 30 H 0.253 0.747 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.348 -0.242 16.485 16.653 hybrid contribution 1.120 1.763 0.964 2.300 sum -1.227 1.520 17.449 17.558 Atomic orbital electron populations 1.22260 0.96657 1.02032 1.01494 1.22734 0.91897 0.97883 0.83797 0.90994 1.19303 0.96487 0.96441 0.88959 1.21084 0.91762 1.34370 1.07964 0.92865 1.24956 0.98375 0.95253 0.95639 1.69939 1.35597 1.35988 1.12086 0.86667 0.85823 0.78238 0.77400 1.20104 1.21238 1.20304 1.86291 1.76458 1.41515 1.19975 1.18116 0.74201 0.84804 0.83306 1.90646 1.52396 1.16010 1.84604 1.21648 1.30802 0.99558 0.97243 1.83508 1.59715 1.03101 1.01572 1.25269 1.04764 1.00863 1.03320 1.19448 1.11218 0.92910 1.00549 1.17043 0.90585 0.85720 0.90841 1.42519 1.73368 1.04887 1.17487 0.93545 0.91331 0.92214 0.95258 0.94350 0.92916 0.81335 0.84047 0.74652 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.53 37.16 0.35 -2.81 16 2 C 0.09 2.10 2.46 -26.73 -0.07 2.03 16 3 H 0.07 1.72 7.11 -51.92 -0.37 1.35 16 4 C 0.02 0.66 4.68 -27.88 -0.13 0.53 16 5 C -0.51 -14.98 8.88 -34.44 -0.31 -15.29 16 6 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 O -0.33 -7.40 9.26 -41.33 -0.38 -7.78 16 14 C 0.55 11.30 7.68 31.88 0.24 11.55 16 15 O -0.54 -11.52 13.70 -19.45 -0.27 -11.79 16 16 C -0.37 -6.35 6.28 -38.66 -0.24 -6.59 16 17 S 0.26 3.64 22.81 -107.50 -2.45 1.18 16 18 C -0.20 -2.17 10.89 29.09 0.32 -1.85 16 19 C -0.20 -2.27 10.12 -41.24 -0.42 -2.69 16 20 C 0.28 3.97 6.86 -84.78 -0.58 3.39 16 21 N -0.84 -10.30 9.04 31.92 0.29 -10.01 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.42 5.91 6.34 -40.82 -0.26 5.65 16 31 H 0.40 3.35 8.92 -40.82 -0.36 2.98 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -32.90 287.05 -7.19 -40.09 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.49 Total: 3.21 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.93 Total: -10.11 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 1.02 Total: -36.34 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.65 Total: -19.57 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.45 Total: 1.18 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.90 -7.19 -40.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820600.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.490 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds