Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46752 * 2 1 4 4 C 1.52994 * 109.47363 * 239.99856 * 2 1 3 5 5 C 1.50707 * 109.47171 * 174.99683 * 4 2 1 6 6 H 1.07999 * 119.99886 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00020 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47333 * 60.00035 * 9 7 5 11 11 H 1.48501 * 109.47294 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46969 * 300.00270 * 9 7 5 13 13 O 1.42902 * 109.47201 * 119.99435 * 2 1 3 14 14 C 1.35006 * 116.99859 * 270.00595 * 13 2 1 15 15 O 1.21733 * 120.00105 * 359.97438 * 14 13 2 16 16 C 1.41261 * 119.99719 * 179.72434 * 14 13 2 17 17 S 1.75813 * 125.48800 * 359.96814 * 16 14 13 18 18 C 1.70558 * 91.69642 * 179.91336 * 17 16 14 19 19 C 1.33542 * 111.23627 * 0.35625 * 18 17 16 20 20 C 1.37627 * 125.48654 * 180.27373 * 16 14 13 21 21 N 1.39150 * 123.52604 * 0.03830 * 20 16 14 22 22 H 1.08993 * 109.47532 * 300.00315 * 1 2 3 23 23 H 1.08999 * 109.47157 * 60.00605 * 1 2 3 24 24 H 1.09006 * 109.46629 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46939 * 294.99241 * 4 2 1 26 26 H 1.08998 * 109.47154 * 54.99706 * 4 2 1 27 27 H 0.96996 * 119.99969 * 179.97438 * 8 7 5 28 28 H 1.08007 * 124.38156 * 180.02562 * 18 17 16 29 29 H 1.08007 * 122.45120 * 179.74474 * 19 18 17 30 30 H 0.96999 * 119.99995 * 359.97438 * 21 20 16 31 31 H 0.97004 * 119.99659 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2306 -1.1934 -2.3576 8 7 3.5767 -1.8378 -3.2993 9 14 6.0923 -1.0621 -2.4359 10 1 6.6840 -1.6879 -1.2262 11 1 6.5874 -1.7620 -3.6484 12 1 6.4855 0.3687 -2.4956 13 8 2.0064 -0.6735 1.1669 14 6 2.2106 0.0794 2.2687 15 8 1.9899 1.2762 2.2376 16 6 2.6752 -0.5224 3.4592 17 16 3.0321 -2.2314 3.6670 18 6 3.4868 -1.9906 5.2931 19 6 3.3655 -0.7080 5.6445 20 6 2.9159 0.1336 4.6449 21 7 2.7255 1.5009 4.8191 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.7518 -1.7715 -1.2054 26 1 1.6054 -0.2618 -2.1369 27 1 4.0611 -2.2445 -4.0347 28 1 3.8238 -2.7750 5.9548 29 1 3.6019 -0.3542 6.6372 30 1 2.4072 2.0442 4.0813 31 1 2.9119 1.9109 5.6782 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695820600.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -88.350703 kcal Electronic energy + Delta-G solvation = -16605.822056 eV Core-core repulsion = 13784.600025 eV Total energy + Delta-G solvation = -2821.222031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54483 -39.55702 -37.56479 -35.38882 -34.03716 -33.45096 -30.58591 -29.38024 -25.82493 -25.18657 -23.54352 -21.64464 -20.30902 -19.93061 -18.56620 -18.06021 -17.66769 -16.95339 -16.59293 -16.19531 -15.74415 -14.95588 -14.73135 -14.64173 -14.38596 -13.98866 -13.78713 -13.36230 -13.18996 -13.10987 -12.65866 -12.64588 -12.26674 -11.75626 -11.70522 -11.56887 -11.46054 -11.37965 -10.92590 -10.59254 -9.79140 -8.50397 -8.22038 -6.31657 -0.39328 0.70129 1.16857 1.36858 1.39889 1.40856 1.48229 2.09497 2.16922 2.39479 2.96109 3.11429 3.98830 4.06129 4.16264 4.22840 4.37021 4.42923 4.73805 4.85285 4.96825 5.00243 5.10438 5.15340 5.35559 5.41409 5.72655 5.81138 6.17526 6.27816 6.77380 6.85076 6.94608 7.35425 8.89478 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.006650 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.768798 B = 4209.307997 C = 4749.084268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.536 4.536 6 H 0.042 0.958 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.271 1.271 13 O -0.345 6.345 14 C 0.536 3.464 15 O -0.564 6.564 16 C -0.424 4.424 17 S 0.211 5.789 18 C -0.162 4.162 19 C -0.206 4.206 20 C 0.294 3.706 21 N -0.827 5.827 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.007 0.993 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.213 0.787 29 H 0.184 0.816 30 H 0.410 0.590 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 0.719 20.353 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.574 4.574 6 H 0.061 0.939 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.196 1.196 13 O -0.261 6.261 14 C 0.389 3.611 15 O -0.461 6.461 16 C -0.547 4.547 17 S 0.474 5.526 18 C -0.301 4.301 19 C -0.242 4.242 20 C 0.168 3.832 21 N -0.369 5.369 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.230 0.770 29 H 0.201 0.799 30 H 0.244 0.756 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.126 -0.307 19.169 19.204 hybrid contribution 0.754 1.823 0.300 1.995 sum -0.372 1.516 19.469 19.532 Atomic orbital electron populations 1.22154 0.93614 1.02837 1.02700 1.22435 0.94222 0.96082 0.83090 0.92711 1.19126 0.95517 0.95331 0.90562 1.21343 0.93197 1.34788 1.08073 0.93931 1.25812 1.03493 0.94607 0.95058 1.70044 1.37613 1.36411 1.12572 0.85621 0.79666 0.78593 0.77963 1.19355 1.19918 1.19618 1.86261 1.77239 1.42168 1.20448 1.18653 0.74149 0.84789 0.83549 1.90607 1.53934 1.16563 1.84952 1.21632 1.34655 1.01378 0.97040 1.83610 1.61804 1.01957 1.05180 1.25728 1.01390 1.01825 1.01118 1.19813 1.10527 0.92417 1.01396 1.17502 0.88636 0.86447 0.90575 1.42609 1.71599 1.04444 1.18235 0.92454 0.89907 0.91590 0.97414 0.95673 0.92489 0.76979 0.79874 0.75614 0.75122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 9.53 71.98 0.69 -5.31 16 2 C 0.10 4.62 2.46 30.59 0.08 4.69 16 3 H 0.05 2.76 7.11 -2.38 -0.02 2.74 16 4 C 0.03 1.75 4.68 29.85 0.14 1.89 16 5 C -0.54 -32.33 8.88 25.60 0.23 -32.10 16 6 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 9 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 O -0.35 -16.31 9.26 -59.25 -0.55 -16.86 16 14 C 0.54 22.91 7.68 68.56 0.53 23.43 16 15 O -0.56 -24.73 13.70 19.07 0.26 -24.47 16 16 C -0.42 -14.59 6.28 22.87 0.14 -14.45 16 17 S 0.21 5.86 22.81 -56.49 -1.29 4.57 16 18 C -0.16 -2.82 10.89 66.75 0.73 -2.09 16 19 C -0.21 -3.71 10.12 21.19 0.21 -3.49 16 20 C 0.29 7.73 6.86 37.82 0.26 7.99 16 21 N -0.83 -18.68 9.04 -52.92 -0.48 -19.16 16 22 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.41 11.31 6.34 -92.71 -0.59 10.72 16 31 H 0.42 5.76 8.92 -92.71 -0.83 4.93 16 Total: -1.00 -73.82 287.05 3.47 -70.35 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.25 Total: 12.67 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.46 Total: -18.46 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -0.19 Total: -75.76 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.29 Total: -41.34 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.29 Total: 4.57 kcal Total: -73.82 3.47 -70.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820600.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds