Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38325 * 119.98200 * 2 1 4 4 C 1.38322 * 120.16499 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 119.93040 * 180.02562 * 4 3 2 6 6 C 1.38359 * 120.13690 * 0.02562 * 4 3 2 7 7 C 1.38685 * 119.96468 * 359.97438 * 6 4 3 8 8 N 1.39955 * 120.08075 * 180.02562 * 7 6 4 9 9 C 1.38452 * 119.98618 * 180.02562 * 2 1 3 10 10 O 1.36025 * 120.06585 * 359.95598 * 9 2 1 11 11 C 1.42908 * 116.99832 * 90.00209 * 10 9 2 12 12 C 1.53005 * 109.47164 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47101 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99897 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99617 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00491 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99738 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47093 * 59.99537 * 17 15 13 19 19 H 1.48498 * 109.47327 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47096 * 299.99731 * 17 15 13 21 21 H 1.08998 * 109.47199 * 89.99821 * 1 2 3 22 22 H 1.08998 * 109.47061 * 210.00187 * 1 2 3 23 23 H 1.09004 * 109.47488 * 329.99942 * 1 2 3 24 24 H 1.08002 * 119.92011 * 359.74777 * 3 2 1 25 25 H 1.07996 * 120.02232 * 180.02562 * 6 4 3 26 26 H 0.97005 * 119.99811 * 179.97438 * 8 7 6 27 27 H 0.96993 * 120.00481 * 359.97438 * 8 7 6 28 28 H 1.09004 * 109.46743 * 299.99797 * 11 10 9 29 29 H 1.08996 * 109.47434 * 59.99816 * 11 10 9 30 30 H 1.08998 * 109.46824 * 300.00428 * 12 11 10 31 31 H 1.09004 * 109.46854 * 59.99942 * 12 11 10 32 32 H 0.97000 * 120.00025 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1981 0.0000 4 6 3.5814 1.2026 -0.0005 5 17 4.4428 2.7098 0.0001 6 6 4.2799 0.0082 -0.0016 7 6 3.5925 -1.1963 -0.0016 8 7 4.2965 -2.4058 -0.0022 9 6 2.1989 -1.1992 -0.0005 10 8 1.5199 -2.3778 -0.0002 11 6 1.1952 -2.9399 -1.2733 12 6 0.4387 -4.2546 -1.0725 13 6 0.0957 -4.8470 -2.4150 14 1 0.3885 -4.3370 -3.3209 15 6 -0.5917 -6.0399 -2.4868 16 7 -0.9478 -6.6611 -1.3836 17 14 -1.0162 -6.7746 -4.1510 18 1 0.2331 -7.0341 -4.9107 19 1 -1.7506 -8.0505 -3.9561 20 1 -1.8680 -5.8234 -4.9092 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6566 2.1325 -0.0041 25 1 5.3599 0.0138 -0.0016 26 1 3.8145 -3.2476 -0.0018 27 1 5.2665 -2.4024 -0.0029 28 1 0.5699 -2.2417 -1.8298 29 1 2.1122 -3.1304 -1.8309 30 1 1.0643 -4.9524 -0.5160 31 1 -0.4784 -4.0645 -0.5147 32 1 -1.4318 -7.5002 -1.4342 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706449886.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = -41.360035 kcal Electronic energy + Delta-G solvation = -16270.567281 eV Core-core repulsion = 13449.339212 eV Total energy + Delta-G solvation = -2821.228069 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99565 -37.28125 -36.21166 -34.75024 -33.34234 -31.47816 -30.20524 -28.08810 -26.76834 -24.74302 -21.97881 -21.45826 -20.96080 -17.63630 -17.16340 -16.64901 -16.03080 -15.09566 -14.87510 -14.73400 -14.30656 -13.91477 -13.44222 -13.16753 -12.73977 -12.53363 -12.25418 -11.90771 -11.78684 -11.69566 -11.10212 -11.05950 -10.91765 -10.60750 -10.51278 -10.10142 -9.63166 -9.33043 -9.20466 -8.43785 -8.36053 -7.41031 -6.10405 -4.14933 1.20315 1.53840 2.13323 3.27813 3.32523 3.34270 3.57749 3.94524 4.27387 4.47161 4.84508 5.20179 5.25768 5.34912 5.42176 5.70026 5.77710 5.88543 5.95735 6.09031 6.18304 6.26129 6.36857 6.60912 6.66237 6.74721 7.39330 7.53771 7.66132 7.84344 7.85453 8.17094 8.26939 8.90947 9.49496 11.00805 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.004233 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.110240 B = 6613.172138 C = 6818.191284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.161 4.161 4 C 0.006 3.994 5 Cl -0.081 7.081 6 C -0.194 4.194 7 C 0.215 3.785 8 N -0.866 5.866 9 C 0.037 3.963 10 O -0.332 6.332 11 C 0.072 3.928 12 C 0.028 3.972 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.410 0.590 27 H 0.397 0.603 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 14.278 3.106 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.021 4.021 5 Cl -0.052 7.052 6 C -0.218 4.218 7 C 0.107 3.893 8 N -0.405 5.405 9 C -0.012 4.012 10 O -0.249 6.249 11 C -0.002 4.002 12 C -0.009 4.009 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.240 0.760 27 H 0.225 0.775 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.883 14.137 3.322 17.024 hybrid contribution 0.196 -0.557 -1.115 1.261 sum 9.079 13.581 2.207 16.484 Atomic orbital electron populations 1.20735 0.90018 1.03384 1.02861 1.19939 0.96825 0.91263 0.96980 1.20525 0.91525 0.97983 1.08139 1.20443 0.92007 0.85992 1.03641 1.98343 1.77417 1.32492 1.96995 1.20171 0.99631 0.89271 1.12698 1.17941 0.90715 0.86747 0.93854 1.42454 1.08608 1.05535 1.83882 1.18184 0.88017 0.87043 1.07916 1.86157 1.73683 1.33317 1.31783 1.23226 0.98123 0.96895 0.81916 1.19084 0.95433 0.88705 0.97717 1.20960 1.37032 1.06542 0.91918 0.92577 1.24972 0.95564 0.96806 0.96737 1.69964 1.38893 1.16980 1.26979 0.86582 0.78628 0.78462 0.83900 1.20161 1.21129 1.20096 0.90837 0.90056 0.91527 0.85244 0.85236 0.76004 0.77519 0.94091 0.94459 0.95723 0.95516 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.79 36.00 0.35 -1.20 16 2 C -0.05 -0.73 5.89 -104.51 -0.62 -1.35 16 3 C -0.16 -2.15 9.48 -39.52 -0.37 -2.52 16 4 C 0.01 0.08 6.32 -39.51 -0.25 -0.17 16 5 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 6 C -0.19 -2.55 9.67 -39.37 -0.38 -2.93 16 7 C 0.21 3.18 6.77 -83.57 -0.57 2.61 16 8 N -0.87 -11.15 9.09 32.51 0.30 -10.85 16 9 C 0.04 0.62 5.71 -39.09 -0.22 0.40 16 10 O -0.33 -6.44 8.34 -19.82 -0.17 -6.60 16 11 C 0.07 1.51 6.00 37.16 0.22 1.73 16 12 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 13 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.08 1.25 7.52 -51.93 -0.39 0.86 16 23 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 24 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 25 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 26 H 0.41 5.77 8.19 -40.82 -0.33 5.44 16 27 H 0.40 3.87 8.84 -40.82 -0.36 3.51 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 295.59 15.07 4.45 4.45 Total: -1.00 -29.30 295.59 -7.60 -36.90 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.01 Total: 3.89 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.39 Total: -16.05 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 1.03 Total: -36.25 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.17 Total: -6.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.30 -7.60 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706449886.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.458 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds