Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99996 * 2 1 4 4 N 1.30345 * 121.63631 * 0.02865 * 3 2 1 5 5 S 1.69587 * 107.16740 * 179.97438 * 4 3 2 6 6 C 1.72017 * 95.78366 * 359.81819 * 5 4 3 7 7 C 1.35057 * 105.60465 * 0.30241 * 6 5 4 8 8 C 1.50695 * 122.64220 * 179.91540 * 7 6 5 9 9 H 1.09002 * 110.55313 * 217.58776 * 8 7 6 10 10 C 1.54995 * 110.61630 * 94.71053 * 8 7 6 11 11 C 1.54816 * 102.09188 * 204.47687 * 10 8 7 12 12 C 1.54099 * 104.18928 * 20.87929 * 11 10 8 13 13 H 1.08995 * 109.88009 * 242.46147 * 12 11 10 14 14 C 1.50696 * 109.87793 * 121.45153 * 12 11 10 15 15 H 1.07997 * 120.00012 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99842 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00069 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99806 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 90.00621 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00111 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00717 * 18 16 14 22 22 O 1.43746 * 107.29097 * 2.03254 * 12 11 10 23 23 H 1.09002 * 109.46901 * 299.99374 * 1 2 3 24 24 H 1.08995 * 109.47227 * 59.99557 * 1 2 3 25 25 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 26 26 H 1.08004 * 127.20371 * 180.22034 * 6 5 4 27 27 H 1.09001 * 110.90893 * 86.28085 * 10 8 7 28 28 H 1.09001 * 110.91120 * 322.67270 * 10 8 7 29 29 H 1.09003 * 110.48366 * 262.20636 * 11 10 8 30 30 H 1.09003 * 110.48632 * 139.55901 * 11 10 8 31 31 H 0.97000 * 119.99838 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 7 1.3678 2.3243 0.0006 5 16 2.4909 3.5951 0.0011 6 6 3.8880 2.5917 0.0059 7 6 3.4244 1.3232 0.0001 8 6 4.3371 0.1241 0.0000 9 1 3.9278 -0.6683 -0.6267 10 6 4.5670 -0.3869 1.4451 11 6 5.9270 -1.1158 1.3188 12 6 6.5634 -0.5112 0.0522 13 1 6.7036 -1.2882 -0.6992 14 6 7.8903 0.1157 0.3948 15 1 8.2530 0.0904 1.4117 16 6 8.6417 0.7205 -0.5904 17 7 8.2003 0.7508 -1.8289 18 14 10.2869 1.4970 -0.1659 19 1 11.3641 0.4852 -0.3119 20 1 10.5488 2.6347 -1.0836 21 1 10.2557 1.9881 1.2351 22 8 5.6613 0.4931 -0.4415 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 4.9202 2.9094 0.0111 27 1 3.7803 -1.0802 1.7424 28 1 4.6354 0.4453 2.1457 29 1 5.7750 -2.1880 1.1948 30 1 6.5494 -0.9160 2.1911 31 1 7.3462 0.3472 -2.0493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712894870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -44.479287 kcal Electronic energy + Delta-G solvation = -16991.424351 eV Core-core repulsion = 14172.104727 eV Total energy + Delta-G solvation = -2819.319624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22583 -38.31071 -36.42428 -32.93182 -31.31201 -31.05440 -28.12533 -27.64046 -24.72279 -23.20514 -21.51214 -20.36075 -19.72467 -18.04928 -17.36195 -16.60459 -16.11219 -15.43316 -14.89192 -14.46725 -14.00743 -13.73447 -13.52848 -13.01520 -12.72764 -12.61532 -12.05680 -11.56732 -11.32811 -11.10072 -10.99665 -10.80133 -10.64103 -10.44692 -10.27475 -10.07544 -9.97647 -9.32767 -8.98724 -8.50820 -8.14607 -7.97550 -6.36842 -4.15446 0.94414 1.60311 1.89471 2.63031 3.26799 3.42498 3.46122 3.62089 4.50201 4.60508 5.09860 5.11474 5.18215 5.39789 5.45521 5.48466 5.55276 5.63844 5.78746 6.00397 6.13924 6.24039 6.25755 6.38729 6.53103 6.68197 6.75790 7.18768 7.27343 8.03606 8.25637 8.47626 8.86802 9.66879 11.04150 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.006431 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.406042 B = 4353.090860 C = 4958.781473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.291 6.291 3 C 0.321 3.679 4 N -0.540 5.540 5 S 0.259 5.741 6 C -0.144 4.144 7 C -0.162 4.162 8 C 0.141 3.859 9 H 0.067 0.933 10 C -0.136 4.136 11 C -0.138 4.138 12 C 0.186 3.814 13 H 0.020 0.980 14 C -0.607 4.607 15 H 0.056 0.944 16 C 0.031 3.969 17 N -0.891 5.891 18 Si 1.070 2.930 19 H -0.287 1.287 20 H -0.284 1.284 21 H -0.288 1.288 22 O -0.364 6.364 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.199 0.801 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 1.045 4.538 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.197 6.197 3 C 0.106 3.894 4 N -0.380 5.380 5 S 0.408 5.592 6 C -0.290 4.290 7 C -0.179 4.179 8 C 0.080 3.920 9 H 0.085 0.915 10 C -0.175 4.175 11 C -0.176 4.176 12 C 0.131 3.869 13 H 0.038 0.962 14 C -0.644 4.644 15 H 0.074 0.926 16 C -0.177 4.177 17 N -0.526 5.526 18 Si 0.898 3.102 19 H -0.214 1.214 20 H -0.209 1.209 21 H -0.214 1.214 22 O -0.284 6.284 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.216 0.784 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.412 3.386 3.757 13.403 hybrid contribution -0.578 -2.449 0.786 2.636 sum -12.990 0.937 4.544 13.793 Atomic orbital electron populations 1.22929 0.77357 1.03246 1.02287 1.86311 1.22405 1.22796 1.88196 1.19942 0.89537 0.85081 0.94835 1.76456 1.26414 1.01069 1.34034 1.83723 0.91112 1.13347 1.70984 1.26443 1.06345 0.95888 1.00361 1.19159 0.90753 0.97324 1.10678 1.21162 0.86071 0.90336 0.94480 0.91520 1.23021 0.97673 0.99996 0.96778 1.22931 0.95095 0.98310 1.01246 1.20481 0.89048 0.87720 0.89620 0.96229 1.22070 1.01848 1.43286 0.97184 0.92622 1.25863 1.03565 0.94942 0.93370 1.70645 1.22694 1.40275 1.18983 0.83541 0.74709 0.76710 0.75191 1.21386 1.20934 1.21439 1.89193 1.13031 1.50278 1.75944 0.92380 0.92363 0.88295 0.78440 0.91688 0.91459 0.92934 0.91157 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.47 101.05 1.06 1.47 16 2 O -0.29 -4.50 10.12 -19.59 -0.20 -4.70 16 3 C 0.32 5.47 7.40 -18.17 -0.13 5.33 16 4 N -0.54 -8.79 11.14 28.92 0.32 -8.47 16 5 S 0.26 3.81 23.71 -107.50 -2.55 1.26 16 6 C -0.14 -2.50 10.63 29.60 0.31 -2.18 16 7 C -0.16 -3.00 5.08 -105.75 -0.54 -3.54 16 8 C 0.14 2.86 3.43 -26.83 -0.09 2.77 16 9 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 10 C -0.14 -2.55 6.57 -24.72 -0.16 -2.71 16 11 C -0.14 -2.87 6.63 -25.20 -0.17 -3.03 16 12 C 0.19 4.73 2.82 -27.31 -0.08 4.66 16 13 H 0.02 0.54 7.98 -51.93 -0.41 0.13 16 14 C -0.61 -16.94 8.78 -34.44 -0.30 -17.24 16 15 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 16 C 0.03 0.88 5.42 -17.82 -0.10 0.78 16 17 N -0.89 -26.99 13.56 55.43 0.75 -26.24 16 18 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 22 O -0.36 -9.08 9.01 -35.23 -0.32 -9.39 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.20 3.57 7.86 -52.48 -0.41 3.16 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.47 7.40 -51.93 -0.38 1.08 16 31 H 0.28 8.59 6.56 -40.82 -0.27 8.33 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -31.15 279.93 -6.66 -37.81 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.61 Total: -0.57 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.20 Total: -13.69 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 1.07 Total: -34.71 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.52 Total: -14.10 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.55 Total: 1.26 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.15 -6.66 -37.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712894870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.667 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds