Wall clock time and date at job start Mon Mar 30 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35953 * 116.99996 * 2 1 4 4 N 1.30345 * 121.63631 * 0.02865 * 3 2 1 5 5 S 1.69587 * 107.16740 * 179.97438 * 4 3 2 6 6 C 1.72017 * 95.78366 * 359.81819 * 5 4 3 7 7 C 1.35057 * 105.60465 * 0.30241 * 6 5 4 8 8 C 1.50695 * 122.64220 * 179.91540 * 7 6 5 9 9 H 1.09002 * 110.55313 * 217.58776 * 8 7 6 10 10 C 1.54995 * 110.61630 * 94.71053 * 8 7 6 11 11 C 1.54816 * 102.09188 * 204.47687 * 10 8 7 12 12 C 1.54099 * 104.18928 * 20.87929 * 11 10 8 13 13 H 1.08995 * 109.88009 * 242.46147 * 12 11 10 14 14 C 1.50696 * 109.87793 * 121.45153 * 12 11 10 15 15 H 1.07997 * 120.00012 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99842 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00069 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99806 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 90.00621 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00111 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00717 * 18 16 14 22 22 O 1.43746 * 107.29097 * 2.03254 * 12 11 10 23 23 H 1.09002 * 109.46901 * 299.99374 * 1 2 3 24 24 H 1.08995 * 109.47227 * 59.99557 * 1 2 3 25 25 H 1.09001 * 109.46810 * 179.97438 * 1 2 3 26 26 H 1.08004 * 127.20371 * 180.22034 * 6 5 4 27 27 H 1.09001 * 110.90893 * 86.28085 * 10 8 7 28 28 H 1.09001 * 110.91120 * 322.67270 * 10 8 7 29 29 H 1.09003 * 110.48366 * 262.20636 * 11 10 8 30 30 H 1.09003 * 110.48632 * 139.55901 * 11 10 8 31 31 H 0.97000 * 119.99838 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 7 1.3678 2.3243 0.0006 5 16 2.4909 3.5951 0.0011 6 6 3.8880 2.5917 0.0059 7 6 3.4244 1.3232 0.0001 8 6 4.3371 0.1241 0.0000 9 1 3.9278 -0.6683 -0.6267 10 6 4.5670 -0.3869 1.4451 11 6 5.9270 -1.1158 1.3188 12 6 6.5634 -0.5112 0.0522 13 1 6.7036 -1.2882 -0.6992 14 6 7.8903 0.1157 0.3948 15 1 8.2530 0.0904 1.4117 16 6 8.6417 0.7205 -0.5904 17 7 8.2003 0.7508 -1.8289 18 14 10.2869 1.4970 -0.1659 19 1 11.3641 0.4852 -0.3119 20 1 10.5488 2.6347 -1.0836 21 1 10.2557 1.9881 1.2351 22 8 5.6613 0.4931 -0.4415 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 4.9202 2.9094 0.0111 27 1 3.7803 -1.0802 1.7424 28 1 4.6354 0.4453 2.1457 29 1 5.7750 -2.1880 1.1948 30 1 6.5494 -0.9160 2.1911 31 1 7.3462 0.3472 -2.0493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712894870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:09 Heat of formation + Delta-G solvation = -66.354369 kcal Electronic energy + Delta-G solvation = -16992.372925 eV Core-core repulsion = 14172.104727 eV Total energy + Delta-G solvation = -2820.268199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.51403 -39.96192 -37.71152 -34.95684 -32.90591 -32.70150 -29.68680 -28.82233 -26.49158 -24.78965 -23.06992 -22.13855 -21.07095 -19.59457 -18.89357 -18.16868 -17.32075 -17.05498 -16.13467 -16.00548 -15.77851 -15.60645 -14.87152 -14.55206 -14.30656 -14.17011 -13.52769 -13.06594 -12.68690 -12.61321 -12.39875 -12.26983 -12.19038 -12.10159 -11.88898 -11.79375 -11.61195 -10.98020 -10.65590 -10.58203 -10.09195 -9.25337 -8.61755 -6.40955 -0.38889 0.35294 0.62204 1.28691 1.55088 1.63914 1.81608 2.15365 2.58314 2.95656 3.36723 3.75349 3.82401 4.00948 4.05963 4.26762 4.29280 4.34072 4.52196 4.56500 4.64325 4.67589 4.73568 4.90198 4.97146 5.10183 5.18609 5.35188 5.97012 6.02676 6.11363 6.47305 6.64649 7.51233 8.78238 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.006431 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.406042 B = 4353.090860 C = 4958.781473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.304 6.304 3 C 0.320 3.680 4 N -0.548 5.548 5 S 0.328 5.672 6 C -0.161 4.161 7 C -0.182 4.182 8 C 0.137 3.863 9 H 0.065 0.935 10 C -0.123 4.123 11 C -0.131 4.131 12 C 0.178 3.822 13 H -0.010 1.010 14 C -0.620 4.620 15 H 0.057 0.943 16 C -0.020 4.020 17 N -0.920 5.920 18 Si 1.119 2.881 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.270 1.270 22 O -0.390 6.390 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.130 0.870 26 H 0.185 0.815 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 1.412 5.813 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.210 6.210 3 C 0.105 3.895 4 N -0.389 5.389 5 S 0.478 5.522 6 C -0.308 4.308 7 C -0.200 4.200 8 C 0.076 3.924 9 H 0.083 0.917 10 C -0.161 4.161 11 C -0.169 4.169 12 C 0.123 3.877 13 H 0.008 0.992 14 C -0.658 4.658 15 H 0.075 0.925 16 C -0.222 4.222 17 N -0.556 5.556 18 Si 0.940 3.060 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.194 1.194 22 O -0.310 6.310 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.202 0.798 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.457 3.737 5.048 14.850 hybrid contribution -0.395 -2.551 0.379 2.609 sum -13.852 1.186 5.427 14.924 Atomic orbital electron populations 1.23236 0.75136 1.05455 1.02476 1.86296 1.24611 1.22093 1.87957 1.19754 0.88964 0.85789 0.94997 1.76375 1.27041 1.01396 1.34088 1.83468 0.88452 1.11308 1.68979 1.26451 1.07042 0.96832 1.00429 1.19091 0.91402 0.96877 1.12612 1.21277 0.84348 0.91467 0.95297 0.91711 1.22956 0.97178 1.00272 0.95670 1.22836 0.95877 0.99536 0.98660 1.20400 0.89276 0.87185 0.90888 0.99249 1.22458 1.03344 1.42772 0.97186 0.92528 1.27367 1.06914 0.95053 0.92840 1.70780 1.22346 1.42232 1.20241 0.82929 0.71042 0.76198 0.75815 1.19678 1.21056 1.19433 1.89107 1.15207 1.50130 1.76543 0.91927 0.92364 0.85160 0.79789 0.88636 0.91459 0.90862 0.91272 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.47 113.37 1.19 1.81 16 2 O -0.30 -8.84 10.12 -93.02 -0.94 -9.78 16 3 C 0.32 10.42 7.40 84.92 0.63 11.05 16 4 N -0.55 -16.76 11.14 -176.09 -1.96 -18.72 16 5 S 0.33 9.03 23.71 -56.49 -1.34 7.69 16 6 C -0.16 -5.53 10.63 67.09 0.71 -4.82 16 7 C -0.18 -6.65 5.08 -20.59 -0.10 -6.75 16 8 C 0.14 5.56 3.43 30.53 0.10 5.67 16 9 H 0.07 2.61 8.06 -2.39 -0.02 2.59 16 10 C -0.12 -4.42 6.57 31.90 0.21 -4.21 16 11 C -0.13 -5.36 6.63 31.59 0.21 -5.15 16 12 C 0.18 9.26 2.82 30.22 0.09 9.34 16 13 H -0.01 -0.57 7.98 -2.39 -0.02 -0.59 16 14 C -0.62 -35.16 8.78 25.60 0.22 -34.94 16 15 H 0.06 3.11 7.33 -2.91 -0.02 3.09 16 16 C -0.02 -1.18 5.42 84.65 0.46 -0.72 16 17 N -0.92 -57.32 13.56 21.45 0.29 -57.03 16 18 Si 1.12 49.99 29.90 68.60 2.05 52.04 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 O -0.39 -19.95 9.01 -148.98 -1.34 -21.30 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.18 6.81 7.86 -2.91 -0.02 6.79 16 27 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 2.82 7.40 -2.39 -0.02 2.80 16 31 H 0.26 16.91 6.56 -92.71 -0.61 16.30 16 Total: -1.00 -67.73 279.93 1.77 -65.96 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.30 Total: 9.85 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.72 Total: -28.72 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -1.67 Total: -75.75 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -2.28 Total: -31.07 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Atomic # 16 Polarization: 9.03 SS G_CDS: -1.34 Total: 7.69 kcal Total: -67.73 1.77 -65.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712894870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.397 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds