Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35950 * 117.00120 * 2 1 4 4 N 1.30346 * 121.63838 * 359.97438 * 3 2 1 5 5 S 1.69583 * 107.17250 * 180.02562 * 4 3 2 6 6 C 1.72030 * 95.78176 * 359.80720 * 5 4 3 7 7 C 1.35060 * 105.59927 * 0.32630 * 6 5 4 8 8 C 1.50706 * 122.63591 * 179.88538 * 7 6 5 9 9 H 1.09000 * 109.89301 * 215.22975 * 8 7 6 10 10 C 1.54378 * 109.82734 * 94.30282 * 8 7 6 11 11 C 1.55309 * 102.25014 * 219.12999 * 10 8 7 12 12 C 1.54944 * 100.94264 * 34.13276 * 11 10 8 13 13 H 1.08999 * 110.39862 * 82.51551 * 12 11 10 14 14 C 1.50699 * 110.31055 * 204.64521 * 12 11 10 15 15 H 1.08004 * 119.99856 * 357.16119 * 14 12 11 16 16 C 1.37875 * 120.00361 * 177.16802 * 14 12 11 17 17 N 1.31515 * 119.99678 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00222 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47465 * 59.99800 * 18 16 14 20 20 H 1.48507 * 109.47238 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47292 * 299.99480 * 18 16 14 22 22 O 1.43236 * 109.82978 * 336.16756 * 8 7 6 23 23 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47356 * 299.99491 * 1 2 3 25 25 H 1.09001 * 109.47348 * 59.99793 * 1 2 3 26 26 H 1.07994 * 127.20159 * 180.22852 * 6 5 4 27 27 H 1.08997 * 110.85123 * 100.93681 * 10 8 7 28 28 H 1.09007 * 110.84905 * 337.31025 * 10 8 7 29 29 H 1.09000 * 111.12311 * 276.21255 * 11 10 8 30 30 H 1.09000 * 111.12934 * 152.05131 * 11 10 8 31 31 H 0.97002 * 119.99908 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3244 -0.0005 5 16 2.4908 3.5951 -0.0010 6 6 3.8881 2.5916 0.0052 7 6 3.4243 1.3231 0.0000 8 6 4.3371 0.1240 0.0004 9 1 3.8979 -0.6767 -0.5947 10 6 4.5618 -0.3625 1.4482 11 6 6.0657 -0.7501 1.4360 12 6 6.6343 0.3086 0.4579 13 1 6.8200 1.2472 0.9799 14 6 7.9042 -0.1954 -0.1780 15 1 8.3098 -1.1536 0.1116 16 6 8.5485 0.5667 -1.1293 17 7 8.0545 1.7333 -1.4822 18 14 10.1230 -0.0577 -1.9169 19 1 9.8541 -1.3435 -2.6094 20 1 10.6147 0.9410 -2.8999 21 1 11.1525 -0.2666 -0.8674 22 8 5.6143 0.4853 -0.5380 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.9202 2.9094 0.0104 27 1 3.9393 -1.2301 1.6670 28 1 4.3741 0.4407 2.1609 29 1 6.2082 -1.7591 1.0490 30 1 6.5065 -0.6457 2.4274 31 1 8.5076 2.2694 -2.1518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712894871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = -39.318528 kcal Electronic energy + Delta-G solvation = -16976.287593 eV Core-core repulsion = 14157.191756 eV Total energy + Delta-G solvation = -2819.095837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13207 -38.17688 -36.22364 -32.73149 -31.19620 -30.90868 -28.25224 -27.69990 -24.99958 -23.12968 -21.18683 -20.34875 -19.54013 -17.89750 -17.03755 -16.47411 -16.01245 -15.04265 -14.87225 -14.73445 -14.32503 -13.74694 -13.25156 -12.74227 -12.42753 -12.29196 -11.91328 -11.73341 -11.21543 -11.00532 -10.92685 -10.86636 -10.62108 -10.46225 -10.40978 -10.22956 -9.79761 -9.15493 -9.13965 -8.59552 -8.08542 -7.82799 -6.03611 -4.15578 1.08058 1.73088 2.02474 2.77507 3.31803 3.36576 3.37605 3.38936 4.41233 4.83796 5.16256 5.17905 5.24821 5.44125 5.48908 5.51562 5.58117 5.77826 5.92979 6.12769 6.27809 6.31912 6.39344 6.54897 6.60792 6.76184 6.86529 7.29730 7.53839 7.86976 8.23038 8.57682 8.99400 9.55375 11.04285 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.006224 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.954367 B = 4497.539477 C = 4996.246531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.291 6.291 3 C 0.320 3.680 4 N -0.543 5.543 5 S 0.249 5.751 6 C -0.143 4.143 7 C -0.177 4.177 8 C 0.145 3.855 9 H 0.075 0.925 10 C -0.143 4.143 11 C -0.147 4.147 12 C 0.209 3.791 13 H 0.027 0.973 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.864 5.864 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 O -0.347 6.347 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.199 0.801 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 0.090 4.303 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.197 6.197 3 C 0.105 3.895 4 N -0.383 5.383 5 S 0.398 5.602 6 C -0.289 4.289 7 C -0.194 4.194 8 C 0.082 3.918 9 H 0.093 0.907 10 C -0.181 4.181 11 C -0.185 4.185 12 C 0.154 3.846 13 H 0.045 0.955 14 C -0.572 4.572 15 H 0.081 0.919 16 C -0.127 4.127 17 N -0.501 5.501 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.266 6.266 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.216 0.784 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.797 1.687 3.976 13.506 hybrid contribution 1.544 -1.722 -0.335 2.337 sum -11.253 -0.035 3.641 11.827 Atomic orbital electron populations 1.22906 0.77560 1.03125 1.02197 1.86305 1.22227 1.22921 1.88243 1.20032 0.89734 0.84942 0.94808 1.76431 1.26526 1.01138 1.34184 1.83681 0.91457 1.13593 1.71418 1.26440 1.06220 0.95813 1.00473 1.19858 0.91160 0.98425 1.09964 1.20907 0.86841 0.89912 0.94126 0.90721 1.23076 0.98160 1.00478 0.96354 1.23346 0.93038 1.01505 1.00571 1.20555 0.86496 0.92250 0.85281 0.95513 1.21073 1.06087 1.05278 1.24774 0.91902 1.25050 0.97104 0.94568 0.95986 1.69994 1.38732 1.10966 1.30360 0.86680 0.83384 0.78790 0.79218 1.20088 1.21203 1.20135 1.88893 1.12122 1.87283 1.38273 0.88389 0.92486 0.92452 0.78416 0.91415 0.91874 0.91389 0.91859 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.47 101.05 1.06 1.49 16 2 O -0.29 -4.62 10.06 -19.58 -0.20 -4.82 16 3 C 0.32 5.61 7.40 -18.17 -0.13 5.47 16 4 N -0.54 -9.16 11.14 28.92 0.32 -8.84 16 5 S 0.25 3.84 23.71 -107.50 -2.55 1.29 16 6 C -0.14 -2.58 10.62 29.60 0.31 -2.27 16 7 C -0.18 -3.35 4.88 -105.74 -0.52 -3.87 16 8 C 0.14 2.96 3.63 -27.16 -0.10 2.86 16 9 H 0.08 1.52 7.98 -51.93 -0.41 1.11 16 10 C -0.14 -2.59 6.53 -24.78 -0.16 -2.75 16 11 C -0.15 -2.97 6.53 -24.48 -0.16 -3.13 16 12 C 0.21 5.22 3.27 -26.86 -0.09 5.14 16 13 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.53 -14.68 8.80 -34.44 -0.30 -14.98 16 15 H 0.06 1.67 7.77 -52.48 -0.41 1.27 16 16 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 17 N -0.86 -24.90 12.93 55.43 0.72 -24.18 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 O -0.35 -8.74 9.50 -35.23 -0.33 -9.08 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.20 3.78 7.89 -52.49 -0.41 3.37 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 29 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -30.11 282.43 -6.73 -36.84 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.73 Total: -1.58 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.19 Total: -9.95 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 1.04 Total: -33.02 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.53 Total: -13.90 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.55 Total: 1.29 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.11 -6.73 -36.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712894871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.483 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds