Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35950 * 117.00120 * 2 1 4 4 N 1.30346 * 121.63838 * 359.97438 * 3 2 1 5 5 S 1.69583 * 107.17250 * 180.02562 * 4 3 2 6 6 C 1.72030 * 95.78176 * 359.80720 * 5 4 3 7 7 C 1.35060 * 105.59927 * 0.32630 * 6 5 4 8 8 C 1.50706 * 122.63591 * 179.88538 * 7 6 5 9 9 H 1.09000 * 109.89301 * 215.22975 * 8 7 6 10 10 C 1.54378 * 109.82734 * 94.30282 * 8 7 6 11 11 C 1.55309 * 102.25014 * 219.12999 * 10 8 7 12 12 C 1.54944 * 100.94264 * 34.13276 * 11 10 8 13 13 H 1.08999 * 110.39862 * 82.51551 * 12 11 10 14 14 C 1.50699 * 110.31055 * 204.64521 * 12 11 10 15 15 H 1.08004 * 119.99856 * 357.16119 * 14 12 11 16 16 C 1.37875 * 120.00361 * 177.16802 * 14 12 11 17 17 N 1.31515 * 119.99678 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00222 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47465 * 59.99800 * 18 16 14 20 20 H 1.48507 * 109.47238 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47292 * 299.99480 * 18 16 14 22 22 O 1.43236 * 109.82978 * 336.16756 * 8 7 6 23 23 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47356 * 299.99491 * 1 2 3 25 25 H 1.09001 * 109.47348 * 59.99793 * 1 2 3 26 26 H 1.07994 * 127.20159 * 180.22852 * 6 5 4 27 27 H 1.08997 * 110.85123 * 100.93681 * 10 8 7 28 28 H 1.09007 * 110.84905 * 337.31025 * 10 8 7 29 29 H 1.09000 * 111.12311 * 276.21255 * 11 10 8 30 30 H 1.09000 * 111.12934 * 152.05131 * 11 10 8 31 31 H 0.97002 * 119.99908 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3244 -0.0005 5 16 2.4908 3.5951 -0.0010 6 6 3.8881 2.5916 0.0052 7 6 3.4243 1.3231 0.0000 8 6 4.3371 0.1240 0.0004 9 1 3.8979 -0.6767 -0.5947 10 6 4.5618 -0.3625 1.4482 11 6 6.0657 -0.7501 1.4360 12 6 6.6343 0.3086 0.4579 13 1 6.8200 1.2472 0.9799 14 6 7.9042 -0.1954 -0.1780 15 1 8.3098 -1.1536 0.1116 16 6 8.5485 0.5667 -1.1293 17 7 8.0545 1.7333 -1.4822 18 14 10.1230 -0.0577 -1.9169 19 1 9.8541 -1.3435 -2.6094 20 1 10.6147 0.9410 -2.8999 21 1 11.1525 -0.2666 -0.8674 22 8 5.6143 0.4853 -0.5380 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 4.9202 2.9094 0.0104 27 1 3.9393 -1.2301 1.6670 28 1 4.3741 0.4407 2.1609 29 1 6.2082 -1.7591 1.0490 30 1 6.5065 -0.6457 2.4274 31 1 8.5076 2.2694 -2.1518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712894871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = -60.226657 kcal Electronic energy + Delta-G solvation = -16977.194237 eV Core-core repulsion = 14157.191756 eV Total energy + Delta-G solvation = -2820.002481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.45885 -39.78129 -37.55523 -34.73345 -32.76728 -32.56316 -29.93289 -28.80768 -26.76932 -24.60681 -22.72539 -22.10659 -20.94121 -19.26821 -18.59328 -18.23537 -17.20039 -16.78041 -16.58945 -16.13464 -15.86481 -15.31982 -14.60377 -14.22746 -14.11903 -13.91767 -13.58143 -12.96718 -12.77671 -12.60203 -12.40078 -12.27832 -12.17598 -12.13461 -12.06422 -11.86423 -11.43777 -11.00543 -10.67176 -10.55602 -9.90051 -9.17696 -8.12213 -6.31442 -0.30408 0.42806 0.69645 1.38699 1.43745 1.46117 1.53211 2.22060 2.43651 3.06712 3.50887 3.80832 3.91196 4.07434 4.22047 4.32356 4.37140 4.45849 4.59036 4.69299 4.74056 4.81841 4.88533 4.97353 5.12475 5.18524 5.29147 5.61488 5.78854 6.09319 6.21271 6.61381 7.04416 7.44032 8.95504 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.006224 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.954367 B = 4497.539477 C = 4996.246531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.318 3.682 4 N -0.550 5.550 5 S 0.312 5.688 6 C -0.161 4.161 7 C -0.193 4.193 8 C 0.138 3.862 9 H 0.073 0.927 10 C -0.128 4.128 11 C -0.138 4.138 12 C 0.202 3.798 13 H -0.001 1.001 14 C -0.557 4.557 15 H 0.065 0.935 16 C 0.026 3.974 17 N -0.898 5.898 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.264 1.264 22 O -0.378 6.378 23 H 0.131 0.869 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.180 0.820 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -0.634 4.769 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.208 6.208 3 C 0.104 3.896 4 N -0.391 5.391 5 S 0.462 5.538 6 C -0.308 4.308 7 C -0.211 4.211 8 C 0.076 3.924 9 H 0.091 0.909 10 C -0.165 4.165 11 C -0.176 4.176 12 C 0.147 3.853 13 H 0.017 0.983 14 C -0.594 4.594 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.189 1.189 22 O -0.298 6.298 23 H 0.149 0.851 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.197 0.803 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.785 0.953 4.455 14.518 hybrid contribution 1.742 -1.453 -0.476 2.317 sum -12.043 -0.500 3.979 12.693 Atomic orbital electron populations 1.23219 0.75306 1.05406 1.02350 1.86292 1.24454 1.22090 1.87976 1.19850 0.89189 0.85669 0.94917 1.76359 1.27057 1.01444 1.34237 1.83427 0.88916 1.11733 1.69688 1.26372 1.06621 0.96892 1.00881 1.19773 0.91864 0.97998 1.11434 1.21027 0.85213 0.90755 0.95390 0.90911 1.23007 0.96921 1.01666 0.94946 1.23227 0.94360 0.99885 1.00118 1.20447 0.86500 0.92353 0.85985 0.98297 1.21516 1.07537 1.05385 1.24981 0.91669 1.25888 1.00397 0.94743 0.96629 1.70131 1.40230 1.12153 1.31027 0.85636 0.79598 0.78096 0.78403 1.19759 1.20976 1.18919 1.88801 1.14045 1.87736 1.39195 0.85120 0.92031 0.92532 0.80273 0.88577 0.91172 0.91315 0.90111 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.47 113.37 1.19 1.84 16 2 O -0.30 -9.03 10.06 -92.99 -0.94 -9.97 16 3 C 0.32 10.75 7.40 84.92 0.63 11.38 16 4 N -0.55 -17.62 11.14 -176.09 -1.96 -19.58 16 5 S 0.31 9.22 23.71 -56.49 -1.34 7.88 16 6 C -0.16 -5.86 10.62 67.09 0.71 -5.15 16 7 C -0.19 -7.26 4.88 -20.59 -0.10 -7.36 16 8 C 0.14 5.64 3.63 30.32 0.11 5.75 16 9 H 0.07 2.95 7.98 -2.39 -0.02 2.93 16 10 C -0.13 -4.45 6.53 31.86 0.21 -4.24 16 11 C -0.14 -5.50 6.53 32.05 0.21 -5.29 16 12 C 0.20 10.33 3.27 30.51 0.10 10.43 16 13 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 14 C -0.56 -31.02 8.80 25.60 0.23 -30.79 16 15 H 0.07 3.48 7.77 -2.91 -0.02 3.46 16 16 C 0.03 1.45 5.42 84.65 0.46 1.91 16 17 N -0.90 -53.11 12.93 21.45 0.28 -52.83 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 O -0.38 -19.56 9.50 -148.98 -1.42 -20.98 16 23 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.18 7.22 7.89 -2.91 -0.02 7.19 16 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 2.34 7.84 -2.38 -0.02 2.32 16 29 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 30 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -64.86 282.43 1.52 -63.34 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.13 Total: 8.04 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.74 Total: -21.52 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.68 Total: -72.41 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -2.35 Total: -30.95 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -1.34 Total: 7.88 kcal Total: -64.86 1.52 -63.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712894871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.113 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds