Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35950 * 117.00162 * 2 1 4 4 N 1.30339 * 121.63878 * 0.26800 * 3 2 1 5 5 S 1.69587 * 107.17038 * 180.22778 * 4 3 2 6 6 C 1.72028 * 95.78225 * 359.72876 * 5 4 3 7 7 C 1.35058 * 105.59737 * 359.97438 * 6 5 4 8 8 C 1.50705 * 122.63579 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.82150 * 144.45661 * 8 7 6 10 10 C 1.54429 * 109.85344 * 265.40439 * 8 7 6 11 11 C 1.55306 * 102.23000 * 140.83502 * 10 8 7 12 12 C 1.54947 * 100.97824 * 325.92130 * 11 10 8 13 13 H 1.09007 * 110.30561 * 277.50522 * 12 11 10 14 14 C 1.50697 * 110.30950 * 155.34179 * 12 11 10 15 15 H 1.08003 * 120.00056 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99859 * 180.02562 * 14 12 11 17 17 N 1.31507 * 119.99860 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99797 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47124 * 119.99669 * 18 16 14 21 21 H 1.48502 * 109.47228 * 239.99650 * 18 16 14 22 22 O 1.43234 * 109.83028 * 23.57675 * 8 7 6 23 23 H 1.09004 * 109.46846 * 300.00611 * 1 2 3 24 24 H 1.09005 * 109.46687 * 60.00092 * 1 2 3 25 25 H 1.08993 * 109.47578 * 179.97438 * 1 2 3 26 26 H 1.07997 * 127.20273 * 180.02562 * 6 5 4 27 27 H 1.09001 * 110.83577 * 22.66185 * 10 8 7 28 28 H 1.09006 * 110.89055 * 259.02927 * 10 8 7 29 29 H 1.09002 * 111.12770 * 207.97856 * 11 10 8 30 30 H 1.08995 * 111.12571 * 83.85771 * 11 10 8 31 31 H 0.97002 * 119.99815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 7 1.3680 2.3243 0.0052 5 16 2.4910 3.5950 -0.0032 6 6 3.8883 2.5915 -0.0058 7 6 3.4244 1.3231 0.0006 8 6 4.3371 0.1239 0.0003 9 1 3.8998 -0.6736 0.6010 10 6 4.5553 -0.3687 -1.4470 11 6 6.0595 -0.7553 -1.4397 12 6 6.6324 0.3066 -0.4676 13 1 6.8146 1.2431 -0.9950 14 6 7.9051 -0.1952 0.1644 15 1 8.2845 -1.1740 -0.0894 16 6 8.5845 0.5948 1.0674 17 7 8.1221 1.7864 1.3767 18 14 10.1616 -0.0275 1.8513 19 1 10.4651 -1.3883 1.3400 20 1 11.2789 0.8899 1.5115 21 1 9.9946 -0.0792 3.3259 22 8 5.6166 0.4869 0.5320 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 4.9204 2.9092 -0.0105 27 1 4.3640 0.4315 -2.1619 28 1 3.9326 -1.2376 -1.6599 29 1 6.4960 -0.6544 -2.4334 30 1 6.2042 -1.7630 -1.0502 31 1 8.5999 2.3421 2.0122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712894873.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = -60.824340 kcal Electronic energy + Delta-G solvation = -16968.827797 eV Core-core repulsion = 14148.799398 eV Total energy + Delta-G solvation = -2820.028399 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46058 -39.78275 -37.55653 -34.74726 -32.77544 -32.56680 -29.93578 -28.80770 -26.77705 -24.60891 -22.72919 -22.11029 -20.94327 -19.27203 -18.60762 -18.23783 -17.20339 -16.77829 -16.60374 -16.13074 -15.86666 -15.32600 -14.61152 -14.23885 -14.11904 -13.92873 -13.57299 -12.97130 -12.82823 -12.60303 -12.37279 -12.27511 -12.17841 -12.12488 -12.05596 -11.87111 -11.43305 -11.00354 -10.69815 -10.55961 -9.90670 -9.17926 -8.13863 -6.32777 -0.30633 0.42588 0.69526 1.38290 1.42429 1.44242 1.55776 2.21904 2.42937 3.04992 3.51116 3.81049 3.91085 4.07283 4.21767 4.32397 4.37143 4.45597 4.59024 4.69321 4.73953 4.81628 4.88342 4.97447 5.12412 5.18568 5.28862 5.60903 5.78456 6.09169 6.20767 6.62459 7.03224 7.42878 8.94456 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.006207 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.323671 B = 4510.177648 C = 5019.950360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.319 3.681 4 N -0.550 5.550 5 S 0.312 5.688 6 C -0.161 4.161 7 C -0.194 4.194 8 C 0.138 3.862 9 H 0.074 0.926 10 C -0.127 4.127 11 C -0.138 4.138 12 C 0.202 3.798 13 H 0.001 0.999 14 C -0.553 4.553 15 H 0.065 0.935 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.959 3.041 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.283 1.283 22 O -0.381 6.381 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.180 0.820 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 -0.763 -4.612 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.208 6.208 3 C 0.104 3.896 4 N -0.391 5.391 5 S 0.462 5.538 6 C -0.308 4.308 7 C -0.211 4.211 8 C 0.077 3.923 9 H 0.091 0.909 10 C -0.165 4.165 11 C -0.176 4.176 12 C 0.147 3.853 13 H 0.018 0.982 14 C -0.590 4.590 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.537 5.537 18 Si 0.784 3.216 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.209 1.209 22 O -0.301 6.301 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.901 0.819 -4.311 14.577 hybrid contribution 1.745 -1.416 0.480 2.298 sum -12.155 -0.597 -3.831 12.759 Atomic orbital electron populations 1.23222 0.75299 1.05410 1.02350 1.86293 1.24456 1.22075 1.87974 1.19844 0.89180 0.85674 0.94911 1.76358 1.27057 1.01447 1.34223 1.83431 0.88910 1.11736 1.69682 1.26375 1.06627 0.96907 1.00903 1.19776 0.91876 0.97998 1.11442 1.21032 0.85091 0.90742 0.95464 0.90851 1.23011 0.96927 1.01653 0.94937 1.23225 0.94346 0.99871 1.00167 1.20461 0.86512 0.92396 0.85960 0.98173 1.21571 1.06936 1.03059 1.27472 0.91709 1.25901 1.00585 0.94790 0.96448 1.70133 1.40050 1.10279 1.33288 0.85512 0.79204 0.78913 0.77990 1.18663 1.20132 1.20939 1.88788 1.14166 1.87668 1.39464 0.92521 0.92043 0.85111 0.80285 0.91194 0.88538 0.90131 0.91316 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.47 113.37 1.19 1.84 16 2 O -0.30 -8.99 10.07 -92.98 -0.94 -9.93 16 3 C 0.32 10.73 7.40 84.92 0.63 11.36 16 4 N -0.55 -17.59 11.14 -176.10 -1.96 -19.55 16 5 S 0.31 9.22 23.71 -56.49 -1.34 7.88 16 6 C -0.16 -5.88 10.62 67.09 0.71 -5.16 16 7 C -0.19 -7.26 4.88 -20.59 -0.10 -7.36 16 8 C 0.14 5.64 3.63 30.34 0.11 5.75 16 9 H 0.07 2.96 7.98 -2.39 -0.02 2.94 16 10 C -0.13 -4.44 6.54 31.87 0.21 -4.23 16 11 C -0.14 -5.51 6.53 32.05 0.21 -5.30 16 12 C 0.20 10.31 3.22 30.51 0.10 10.41 16 13 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 14 C -0.55 -30.81 8.79 25.60 0.23 -30.59 16 15 H 0.06 3.48 7.76 -2.91 -0.02 3.46 16 16 C 0.02 1.40 5.43 84.66 0.46 1.86 16 17 N -0.90 -53.14 13.05 21.45 0.28 -52.86 16 18 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 O -0.38 -19.68 9.65 -148.98 -1.44 -21.12 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.18 7.23 7.89 -2.91 -0.02 7.21 16 27 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 28 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.07 2.70 8.04 -2.39 -0.02 2.68 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -64.90 282.64 1.50 -63.40 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.13 Total: 7.95 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.74 Total: -21.41 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.68 Total: -72.41 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -2.37 Total: -31.05 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -1.34 Total: 7.88 kcal Total: -64.90 1.50 -63.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712894873.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.579 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds