Wall clock time and date at job start Mon Mar 30 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28624 * 124.70790 * 2 1 4 4 C 1.33601 * 115.76903 * 180.02562 * 3 2 1 5 5 C 1.47111 * 123.15451 * 179.97438 * 4 3 2 6 6 O 1.21558 * 119.99760 * 180.02562 * 5 4 3 7 7 O 1.34795 * 119.99858 * 0.02615 * 5 4 3 8 8 C 1.45204 * 116.99987 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46864 * 29.99760 * 8 7 5 10 10 C 1.53004 * 109.47155 * 270.00283 * 8 7 5 11 11 C 1.50694 * 109.47440 * 149.99844 * 8 7 5 12 12 H 1.08003 * 119.99747 * 95.26938 * 11 8 7 13 13 C 1.37878 * 120.00262 * 275.27749 * 11 8 7 14 14 N 1.31515 * 119.99863 * 5.45781 * 13 11 8 15 15 Si 1.86798 * 120.00097 * 185.46227 * 13 11 8 16 16 H 1.48501 * 109.46974 * 269.99623 * 15 13 11 17 17 H 1.48500 * 109.47338 * 29.99470 * 15 13 11 18 18 H 1.48498 * 109.47436 * 149.99685 * 15 13 11 19 19 C 1.35292 * 113.68675 * 0.26486 * 4 3 2 20 20 C 1.50708 * 125.58622 * 179.72985 * 19 4 3 21 21 S 1.70766 * 124.70672 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46882 * 89.98321 * 1 2 3 23 23 H 1.09000 * 109.47081 * 209.97662 * 1 2 3 24 24 H 1.08998 * 109.47681 * 329.98259 * 1 2 3 25 25 H 1.09000 * 109.47134 * 175.06148 * 10 8 7 26 26 H 1.09000 * 109.46661 * 295.06123 * 10 8 7 27 27 H 1.08998 * 109.47207 * 55.06275 * 10 8 7 28 28 H 0.97000 * 119.99687 * 355.05826 * 14 13 11 29 29 H 1.09005 * 109.46827 * 89.99867 * 20 19 4 30 30 H 1.09000 * 109.46817 * 209.99823 * 20 19 4 31 31 H 1.09000 * 109.46897 * 330.00041 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2394 1.0574 0.0000 4 6 3.5592 0.8498 -0.0005 5 6 4.5453 1.9414 -0.0012 6 8 5.7339 1.6867 -0.0021 7 8 4.1308 3.2241 -0.0007 8 6 5.1592 4.2492 -0.0008 9 1 6.0447 3.8754 -0.5150 10 6 5.5210 4.6088 1.4417 11 6 4.6462 5.4754 -0.7107 12 1 4.2087 6.2841 -0.1440 13 6 4.7351 5.5650 -2.0837 14 7 5.1679 4.5387 -2.7830 15 14 4.2409 7.1441 -2.9506 16 1 2.7978 7.0883 -3.2963 17 1 4.4905 8.3006 -2.0530 18 1 5.0416 7.2990 -4.1916 19 6 3.9036 -0.4586 -0.0067 20 6 5.3121 -0.9946 -0.0146 21 16 2.4793 -1.4038 -0.0006 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8898 0.5141 25 1 6.3529 5.3131 1.4429 26 1 4.6591 5.0637 1.9298 27 1 5.8088 3.7058 1.9801 28 1 5.4920 3.7449 -2.3294 29 1 5.6559 -1.1276 1.0112 30 1 5.3328 -1.9538 -0.5320 31 1 5.9660 -0.2902 -0.5286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752500531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:03 Heat of formation + Delta-G solvation = -84.890796 kcal Electronic energy + Delta-G solvation = -16768.242052 eV Core-core repulsion = 13947.170053 eV Total energy + Delta-G solvation = -2821.071998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76585 -40.28359 -37.68854 -35.27857 -34.35990 -32.27686 -31.23318 -27.89101 -26.94606 -25.68756 -23.62926 -22.36099 -20.59675 -19.75400 -19.33093 -17.75282 -17.21760 -17.14518 -16.01717 -15.73705 -15.65596 -15.32505 -14.58728 -14.39626 -14.29406 -13.90364 -13.75795 -13.31190 -13.19283 -13.09721 -13.05483 -12.85922 -12.71170 -12.32880 -11.92792 -11.49137 -11.38708 -10.84188 -10.81635 -10.67327 -10.46441 -9.89383 -8.92945 -6.72051 -0.67058 0.11145 0.42967 0.73957 1.49248 1.55633 1.78191 2.02596 2.11143 2.46772 2.94362 3.19211 3.68425 3.83080 4.00345 4.21055 4.38702 4.47564 4.52625 4.55968 4.66202 4.68314 4.72299 4.87287 5.08549 5.11210 5.15320 5.58590 5.81013 5.96010 6.25140 6.43878 6.96069 7.18175 8.44057 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.006336 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.540961 B = 4417.803824 C = 4879.755334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.004 3.996 3 N -0.470 5.470 4 C -0.022 4.022 5 C 0.516 3.484 6 O -0.540 6.540 7 O -0.356 6.356 8 C 0.174 3.826 9 H 0.017 0.983 10 C -0.134 4.134 11 C -0.605 4.605 12 H 0.069 0.931 13 C -0.023 4.023 14 N -0.908 5.908 15 Si 1.130 2.870 16 H -0.272 1.272 17 H -0.257 1.257 18 H -0.276 1.276 19 C -0.198 4.198 20 C -0.087 4.087 21 S 0.310 5.690 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.253 0.747 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -14.146 5.697 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.276 4.276 3 N -0.186 5.186 4 C -0.154 4.154 5 C 0.361 3.639 6 O -0.433 6.433 7 O -0.272 6.272 8 C 0.123 3.877 9 H 0.035 0.965 10 C -0.191 4.191 11 C -0.640 4.640 12 H 0.087 0.913 13 C -0.224 4.224 14 N -0.544 5.544 15 Si 0.947 3.053 16 H -0.197 1.197 17 H -0.181 1.181 18 H -0.201 1.201 19 C -0.322 4.322 20 C -0.145 4.145 21 S 0.568 5.432 22 H 0.119 0.881 23 H 0.138 0.862 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.554 -13.999 4.262 16.950 hybrid contribution 1.309 0.245 1.466 1.981 sum -7.245 -13.754 5.728 16.568 Atomic orbital electron populations 1.20689 0.81714 1.05774 1.05387 1.27892 1.04302 0.91538 1.03824 1.66958 1.03014 1.33488 1.15153 1.19469 0.90031 0.91833 1.14033 1.20684 0.86753 0.84274 0.72207 1.90660 1.18242 1.85249 1.49140 1.87132 1.44732 1.14374 1.80974 1.20891 0.87111 0.84274 0.95469 0.96494 1.21904 1.01675 1.00440 0.95115 1.22385 1.45690 1.00650 0.95319 0.91293 1.27948 0.92619 1.05571 0.96239 1.70871 1.38643 1.05485 1.39369 0.82839 0.77064 0.70183 0.75165 1.19733 1.18073 1.20141 1.26072 1.06286 0.96022 1.03831 1.20609 0.87233 1.02106 1.04569 1.81971 0.89940 1.07702 1.63563 0.88138 0.86234 0.89779 0.90516 0.92296 0.94207 0.93678 0.88644 0.87434 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.46 71.24 0.74 -0.57 16 2 C 0.00 0.12 7.34 88.58 0.65 0.77 16 3 N -0.47 -19.16 10.60 -180.91 -1.92 -21.08 16 4 C -0.02 -0.94 6.71 40.52 0.27 -0.67 16 5 C 0.52 27.20 7.91 70.15 0.56 27.75 16 6 O -0.54 -28.77 13.37 19.65 0.26 -28.51 16 7 O -0.36 -20.84 9.80 -57.07 -0.56 -21.40 16 8 C 0.17 10.08 2.13 29.85 0.06 10.15 16 9 H 0.02 1.09 5.97 -2.38 -0.01 1.07 16 10 C -0.13 -6.41 9.53 71.98 0.69 -5.72 16 11 C -0.60 -36.20 8.70 25.60 0.22 -35.97 16 12 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 13 C -0.02 -1.35 5.45 84.65 0.46 -0.89 16 14 N -0.91 -58.76 13.63 21.45 0.29 -58.46 16 15 Si 1.13 50.67 29.91 68.60 2.05 52.73 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 C -0.20 -6.44 6.40 25.01 0.16 -6.28 16 20 C -0.09 -2.43 9.64 71.24 0.69 -1.74 16 21 S 0.31 6.58 22.89 -56.49 -1.29 5.29 16 22 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.25 17.18 6.78 -92.71 -0.63 16.55 16 29 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.58 6.01 -2.39 -0.01 2.57 16 Total: -1.00 -80.67 287.48 4.63 -76.04 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.29 Total: 8.58 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.50 Total: -13.18 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.62 Total: -79.54 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.30 Total: -49.91 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.73 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.29 Total: 5.29 kcal Total: -80.67 4.63 -76.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752500531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.851 kcal (2) G-P(sol) polarization free energy of solvation -80.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds