Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30652 * 122.10831 * 2 1 4 4 C 1.30606 * 115.91036 * 180.02562 * 3 2 1 5 5 C 1.47101 * 125.54155 * 179.97438 * 4 3 2 6 6 O 1.21537 * 120.00098 * 359.97438 * 5 4 3 7 7 O 1.34818 * 119.99867 * 179.97438 * 5 4 3 8 8 C 1.45202 * 117.00305 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46505 * 330.00009 * 8 7 5 10 10 C 1.53006 * 109.47243 * 89.99553 * 8 7 5 11 11 C 1.50698 * 109.47680 * 210.00045 * 8 7 5 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 8 15 15 Si 1.86790 * 120.00086 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47385 * 59.99525 * 15 13 11 17 17 H 1.48500 * 109.47279 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99599 * 15 13 11 19 19 S 1.76103 * 108.91406 * 0.22618 * 4 3 2 20 20 C 1.34293 * 122.10957 * 180.02562 * 2 1 3 21 21 C 1.50702 * 125.45158 * 359.97157 * 20 2 1 22 22 H 1.09005 * 109.46893 * 89.96722 * 1 2 3 23 23 H 1.08996 * 109.47204 * 209.97230 * 1 2 3 24 24 H 1.09008 * 109.46905 * 329.97545 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00200 * 10 8 7 26 26 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 27 27 H 1.09000 * 109.47050 * 300.00466 * 10 8 7 28 28 H 0.97005 * 119.99198 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.47315 * 90.00825 * 21 20 2 30 30 H 1.09006 * 109.47121 * 210.00427 * 21 20 2 31 31 H 1.08996 * 109.47038 * 330.00183 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2015 1.1067 0.0000 4 6 3.4999 0.9657 -0.0005 5 6 4.4792 2.0633 -0.0012 6 8 4.0984 3.2175 -0.0017 7 8 5.7992 1.7890 -0.0012 8 6 6.7079 2.9215 -0.0024 9 1 6.2410 3.7613 -0.5170 10 6 7.0273 3.3207 1.4397 11 6 7.9819 2.5427 -0.7127 12 1 8.0972 1.5498 -1.1218 13 6 9.0006 3.4631 -0.8392 14 7 8.8602 4.6720 -0.3404 15 14 10.5799 2.9933 -1.7189 16 1 10.2705 2.6059 -3.1188 17 1 11.5092 4.1516 -1.7203 18 1 11.2156 1.8490 -1.0177 19 16 3.8875 -0.7522 -0.0077 20 6 2.2208 -1.1375 -0.0005 21 6 1.6456 -2.5304 -0.0005 22 1 -0.3633 0.0006 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5143 25 1 7.4942 2.4809 1.9543 26 1 7.7091 4.1711 1.4387 27 1 6.1058 3.5948 1.9534 28 1 9.5768 5.3196 -0.4298 29 1 1.5066 -2.8662 -1.0282 30 1 2.3298 -3.2061 0.5130 31 1 0.6846 -2.5266 0.5137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774093087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -50.742409 kcal Electronic energy + Delta-G solvation = -16255.943492 eV Core-core repulsion = 13436.352279 eV Total energy + Delta-G solvation = -2819.591213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19384 -39.16869 -35.77421 -33.41797 -33.23650 -30.06203 -29.65220 -26.74517 -25.35994 -24.94433 -22.01520 -20.20341 -18.65886 -18.35360 -17.07095 -16.47352 -15.67866 -15.61823 -14.71876 -14.64087 -14.00910 -13.34316 -13.27276 -13.19402 -12.95351 -12.60219 -12.23554 -12.12354 -11.92659 -11.28917 -11.14797 -11.08375 -10.88374 -10.44555 -10.35230 -10.20740 -9.66364 -9.54380 -9.42007 -8.98487 -8.64629 -8.52152 -6.21582 -4.29175 0.25630 1.22936 1.70197 2.36990 3.04503 3.25402 3.29343 3.33551 3.39624 4.28042 4.58724 4.67574 4.82660 5.11602 5.16694 5.26170 5.45093 5.51084 5.60972 5.65397 5.74313 6.13723 6.56068 6.82526 6.85730 7.01740 7.51708 7.60075 7.66103 7.85259 8.06630 8.47965 8.79454 9.36010 10.85901 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.038823 B = 0.004998 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.039855 B = 5600.537746 C = 6061.301908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.399 5.399 4 C 0.016 3.984 5 C 0.531 3.469 6 O -0.479 6.479 7 O -0.348 6.348 8 C 0.218 3.782 9 H 0.051 0.949 10 C -0.157 4.157 11 C -0.523 4.523 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.914 3.086 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 S 0.233 5.767 20 C -0.251 4.251 21 C -0.074 4.074 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.018 0.982 28 H 0.268 0.732 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -13.714 1.229 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.117 5.117 4 C -0.257 4.257 5 C 0.370 3.630 6 O -0.366 6.366 7 O -0.264 6.264 8 C 0.166 3.834 9 H 0.068 0.932 10 C -0.214 4.214 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.741 3.259 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 S 0.490 5.510 20 C -0.374 4.374 21 C -0.133 4.133 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.360 -13.154 1.244 17.425 hybrid contribution -0.089 0.073 -0.394 0.411 sum -11.448 -13.081 0.850 17.404 Atomic orbital electron populations 1.20379 0.87040 1.03282 1.02922 1.20159 0.98679 0.85757 1.04591 1.66494 1.03320 1.30639 1.11202 1.26263 0.92970 0.95343 1.11104 1.19240 0.83198 0.85775 0.74835 1.90844 1.80854 1.20611 1.44283 1.86561 1.13664 1.44148 1.81980 1.20801 0.85367 0.82069 0.95126 0.93162 1.22194 1.00041 1.02894 0.96319 1.20953 0.98285 1.00010 1.36869 0.91169 1.24880 0.98863 0.94605 0.95508 1.69892 1.33764 1.04357 1.44528 0.86292 0.81613 0.78001 0.79991 1.19936 1.20991 1.19872 1.84147 1.01972 1.02312 1.62603 1.25618 0.99130 1.01755 1.10917 1.20280 1.01124 0.88772 1.03143 0.90671 0.90717 0.90514 0.94193 0.87950 0.96321 0.92225 0.90217 0.90869 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.02 36.01 0.36 -0.40 16 2 C 0.05 0.65 6.68 -84.48 -0.56 0.08 16 3 N -0.40 -7.25 10.57 -7.72 -0.08 -7.33 16 4 C 0.02 0.31 7.46 -14.48 -0.11 0.20 16 5 C 0.53 12.19 7.93 34.33 0.27 12.46 16 6 O -0.48 -12.32 16.33 -19.29 -0.32 -12.63 16 7 O -0.35 -8.41 9.74 -40.81 -0.40 -8.81 16 8 C 0.22 5.88 2.57 -27.88 -0.07 5.81 16 9 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 10 C -0.16 -3.98 9.33 37.16 0.35 -3.63 16 11 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 12 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 15 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 S 0.23 3.33 23.03 -107.50 -2.48 0.85 16 20 C -0.25 -3.02 6.36 -35.70 -0.23 -3.25 16 21 C -0.07 -0.56 10.04 36.01 0.36 -0.20 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.53 6.60 -51.93 -0.34 0.19 16 24 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.48 6.65 -51.93 -0.35 0.13 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -31.50 287.88 -6.81 -38.31 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -3.46 Total: -4.05 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.03 Total: -2.12 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.55 Total: -31.73 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.71 Total: -21.44 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.85 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.50 -6.81 -38.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774093087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds