Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30652 * 122.10831 * 2 1 4 4 C 1.30606 * 115.91036 * 180.02562 * 3 2 1 5 5 C 1.47101 * 125.54155 * 179.97438 * 4 3 2 6 6 O 1.21537 * 120.00098 * 359.97438 * 5 4 3 7 7 O 1.34818 * 119.99867 * 179.97438 * 5 4 3 8 8 C 1.45202 * 117.00305 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46505 * 330.00009 * 8 7 5 10 10 C 1.53006 * 109.47243 * 89.99553 * 8 7 5 11 11 C 1.50698 * 109.47680 * 210.00045 * 8 7 5 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 8 15 15 Si 1.86790 * 120.00086 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47385 * 59.99525 * 15 13 11 17 17 H 1.48500 * 109.47279 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99599 * 15 13 11 19 19 S 1.76103 * 108.91406 * 0.22618 * 4 3 2 20 20 C 1.34293 * 122.10957 * 180.02562 * 2 1 3 21 21 C 1.50702 * 125.45158 * 359.97157 * 20 2 1 22 22 H 1.09005 * 109.46893 * 89.96722 * 1 2 3 23 23 H 1.08996 * 109.47204 * 209.97230 * 1 2 3 24 24 H 1.09008 * 109.46905 * 329.97545 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00200 * 10 8 7 26 26 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 27 27 H 1.09000 * 109.47050 * 300.00466 * 10 8 7 28 28 H 0.97005 * 119.99198 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.47315 * 90.00825 * 21 20 2 30 30 H 1.09006 * 109.47121 * 210.00427 * 21 20 2 31 31 H 1.08996 * 109.47038 * 330.00183 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2015 1.1067 0.0000 4 6 3.4999 0.9657 -0.0005 5 6 4.4792 2.0633 -0.0012 6 8 4.0984 3.2175 -0.0017 7 8 5.7992 1.7890 -0.0012 8 6 6.7079 2.9215 -0.0024 9 1 6.2410 3.7613 -0.5170 10 6 7.0273 3.3207 1.4397 11 6 7.9819 2.5427 -0.7127 12 1 8.0972 1.5498 -1.1218 13 6 9.0006 3.4631 -0.8392 14 7 8.8602 4.6720 -0.3404 15 14 10.5799 2.9933 -1.7189 16 1 10.2705 2.6059 -3.1188 17 1 11.5092 4.1516 -1.7203 18 1 11.2156 1.8490 -1.0177 19 16 3.8875 -0.7522 -0.0077 20 6 2.2208 -1.1375 -0.0005 21 6 1.6456 -2.5304 -0.0005 22 1 -0.3633 0.0006 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8898 0.5143 25 1 7.4942 2.4809 1.9543 26 1 7.7091 4.1711 1.4387 27 1 6.1058 3.5948 1.9534 28 1 9.5768 5.3196 -0.4298 29 1 1.5066 -2.8662 -1.0282 30 1 2.3298 -3.2061 0.5130 31 1 0.6846 -2.5266 0.5137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774093087.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -70.940811 kcal Electronic energy + Delta-G solvation = -16256.819361 eV Core-core repulsion = 13436.352279 eV Total energy + Delta-G solvation = -2820.467082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.62571 -40.76168 -37.68865 -35.39501 -34.35666 -31.84952 -30.76499 -28.06886 -27.46126 -25.97080 -23.73664 -21.99007 -20.01990 -19.68205 -18.76559 -18.25527 -17.51700 -17.20379 -16.49602 -16.03401 -15.26551 -14.80368 -14.45217 -14.23243 -14.01593 -13.90304 -13.79155 -13.42407 -13.19798 -13.06967 -12.83439 -12.81222 -12.42679 -12.19627 -12.09321 -11.96501 -11.70347 -11.07893 -10.91865 -10.61934 -10.52866 -9.75339 -8.30154 -6.48026 -1.00653 0.02906 0.56851 1.03015 1.37923 1.47016 1.48955 1.58586 1.87430 2.38152 3.00895 3.42195 3.74827 3.87754 3.97362 4.45227 4.56971 4.68637 4.73709 4.74588 4.75305 4.80816 4.94130 5.01237 5.07286 5.35965 5.42178 5.53941 5.79207 5.95645 6.39321 6.56378 6.75152 7.22687 8.77844 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.038823 B = 0.004998 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.039855 B = 5600.537746 C = 6061.301908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.020 3.980 3 N -0.420 5.420 4 C -0.054 4.054 5 C 0.530 3.470 6 O -0.525 6.525 7 O -0.348 6.348 8 C 0.219 3.781 9 H 0.010 0.990 10 C -0.144 4.144 11 C -0.550 4.550 12 H 0.073 0.927 13 C 0.018 3.982 14 N -0.917 5.917 15 Si 0.987 3.013 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.261 1.261 19 S 0.279 5.721 20 C -0.211 4.211 21 C -0.080 4.080 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.021 0.979 28 H 0.272 0.728 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.836 -17.214 0.945 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 N -0.140 5.140 4 C -0.323 4.323 5 C 0.372 3.628 6 O -0.415 6.415 7 O -0.263 6.263 8 C 0.166 3.834 9 H 0.028 0.972 10 C -0.202 4.202 11 C -0.587 4.587 12 H 0.091 0.909 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.809 3.191 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.185 1.185 19 S 0.535 5.465 20 C -0.335 4.335 21 C -0.139 4.139 22 H 0.106 0.894 23 H 0.129 0.871 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.988 -16.655 0.969 20.544 hybrid contribution -0.073 0.986 -0.301 1.033 sum -12.062 -15.669 0.668 19.785 Atomic orbital electron populations 1.20543 0.84071 1.04592 1.04150 1.20810 1.00498 0.85183 1.05356 1.66450 1.03479 1.33513 1.10577 1.25484 0.92662 0.96661 1.17468 1.19886 0.82992 0.86745 0.73167 1.90791 1.81216 1.22873 1.46650 1.86527 1.14599 1.42757 1.82455 1.20559 0.85575 0.81816 0.95442 0.97219 1.22022 0.99813 1.02595 0.95737 1.21228 0.98942 1.00520 1.37998 0.90920 1.25861 1.02268 0.94259 0.95832 1.70020 1.34960 1.05359 1.45096 0.85174 0.76948 0.78151 0.78784 1.19307 1.20254 1.18524 1.83889 1.03555 0.98141 1.60959 1.26386 0.97686 1.03645 1.05746 1.20641 1.02516 0.85524 1.05184 0.89434 0.87117 0.91537 0.92974 0.89567 0.95990 0.91849 0.87893 0.89113 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.02 71.24 0.71 -0.54 16 2 C 0.02 0.51 6.68 41.83 0.28 0.79 16 3 N -0.42 -15.48 10.57 -178.34 -1.88 -17.37 16 4 C -0.05 -2.12 7.46 87.20 0.65 -1.47 16 5 C 0.53 25.86 7.93 70.15 0.56 26.42 16 6 O -0.53 -29.16 16.33 19.71 0.32 -28.84 16 7 O -0.35 -17.64 9.74 -57.30 -0.56 -18.20 16 8 C 0.22 12.40 2.57 29.85 0.08 12.47 16 9 H 0.01 0.63 7.16 -2.39 -0.02 0.62 16 10 C -0.14 -7.61 9.33 71.98 0.67 -6.94 16 11 C -0.55 -31.30 8.90 25.60 0.23 -31.07 16 12 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 13 C 0.02 0.98 5.30 84.65 0.45 1.43 16 14 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 15 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 S 0.28 7.54 23.03 -56.49 -1.30 6.24 16 20 C -0.21 -4.35 6.36 24.79 0.16 -4.19 16 21 C -0.08 -0.74 10.04 71.24 0.72 -0.03 16 22 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.11 1.01 6.60 -2.39 -0.02 1.00 16 24 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.09 4.83 6.07 -2.39 -0.01 4.82 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.11 0.56 6.65 -2.39 -0.02 0.54 16 Total: -1.00 -73.03 287.88 4.49 -68.53 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.15 Total: 0.80 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.50 Total: -3.12 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -1.64 Total: -69.99 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.24 Total: -47.04 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 7.54 SS G_CDS: -1.30 Total: 6.24 kcal Total: -73.03 4.49 -68.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774093087.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.406 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds