Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47372 * 2 1 4 4 H 1.08998 * 109.47379 * 304.99259 * 3 2 1 5 5 C 1.50699 * 109.46968 * 184.99724 * 3 2 1 6 6 H 1.08006 * 119.99845 * 239.99972 * 5 3 2 7 7 C 1.37872 * 120.00235 * 60.00274 * 5 3 2 8 8 N 1.31510 * 120.00217 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00026 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46950 * 89.99935 * 9 7 5 11 11 H 1.48496 * 109.46827 * 209.99550 * 9 7 5 12 12 H 1.48495 * 109.47281 * 329.99557 * 9 7 5 13 13 O 1.45201 * 109.47276 * 64.99563 * 3 2 1 14 14 C 1.34738 * 117.00203 * 269.99881 * 13 3 2 15 15 O 1.21490 * 119.99795 * 0.02562 * 14 13 3 16 16 C 1.47555 * 120.00254 * 179.97438 * 14 13 3 17 17 C 1.39527 * 122.11846 * 180.02562 * 16 14 13 18 18 C 1.34975 * 111.69222 * 180.02562 * 17 16 14 19 19 C 1.50699 * 127.27319 * 179.97438 * 18 17 16 20 20 S 1.71758 * 105.46248 * 359.97438 * 18 17 16 21 21 N 1.30656 * 122.11663 * 0.02562 * 16 14 13 22 22 H 1.08991 * 109.47637 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46939 * 300.00764 * 1 2 3 24 24 H 1.09005 * 109.46900 * 60.00015 * 1 2 3 25 25 H 1.09001 * 109.47402 * 239.98974 * 2 1 3 26 26 H 1.09008 * 109.46642 * 119.99527 * 2 1 3 27 27 H 0.96999 * 120.00482 * 180.02562 * 8 7 5 28 28 H 1.08006 * 124.15757 * 0.05829 * 17 16 14 29 29 H 1.08996 * 109.47580 * 180.02562 * 19 18 17 30 30 H 1.09001 * 109.47228 * 300.01914 * 19 18 17 31 31 H 1.09007 * 109.47040 * 60.01670 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4064 0.3365 -2.1728 9 14 6.0051 0.8810 -1.3815 10 1 6.5549 -0.3505 -0.7599 11 1 6.3831 0.9220 -2.8170 12 1 6.5571 2.0735 -0.6900 13 8 1.6559 2.0917 1.2406 14 6 0.4683 2.7279 1.2559 15 8 -0.2274 2.7395 0.2600 16 6 0.0122 3.4097 2.4825 17 6 -1.2092 4.0811 2.5475 18 6 -1.4142 4.6269 3.7648 19 6 -2.6099 5.4246 4.2177 20 16 -0.0246 4.2205 4.6889 21 7 0.7265 3.4228 3.5764 22 1 -0.3634 -1.0275 -0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5140 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8295 -0.0620 -2.9494 28 1 -1.9054 4.1546 1.7250 29 1 -2.4737 5.7256 5.2564 30 1 -2.7126 6.3119 3.5929 31 1 -3.5083 4.8134 4.1313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774259871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = -75.154629 kcal Electronic energy + Delta-G solvation = -16617.691170 eV Core-core repulsion = 13797.041364 eV Total energy + Delta-G solvation = -2820.649807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.75046 -40.05837 -37.62329 -35.56962 -34.25475 -33.37436 -29.56698 -29.20620 -27.18533 -25.12388 -22.81105 -21.68502 -21.09313 -19.55860 -18.90691 -18.14091 -17.55899 -17.31666 -16.50054 -15.83586 -15.26258 -14.89094 -14.75288 -14.11955 -14.05263 -13.74086 -13.53003 -13.40562 -13.34437 -13.17052 -12.85836 -12.60576 -12.33573 -12.16948 -11.86657 -11.81274 -11.49863 -11.35607 -10.88688 -10.56626 -10.51863 -9.86000 -8.30562 -6.47682 -0.56542 0.40090 0.53540 0.68588 1.39155 1.41600 1.52675 1.91214 1.96341 2.39330 2.98547 3.59616 3.84973 4.16488 4.25149 4.32098 4.34504 4.49898 4.66216 4.77037 4.81508 4.90779 5.02268 5.16124 5.21094 5.27113 5.31659 5.46144 5.61038 5.86970 6.04104 6.54414 6.86328 7.22954 8.76554 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034711 B = 0.005347 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.476121 B = 5235.659746 C = 5714.115280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.012 0.988 5 C -0.554 4.554 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.269 1.269 13 O -0.349 6.349 14 C 0.521 3.479 15 O -0.525 6.525 16 C 0.045 3.955 17 C -0.159 4.159 18 C -0.229 4.229 19 C -0.074 4.074 20 S 0.547 5.453 21 N -0.547 5.547 22 H 0.065 0.935 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.272 0.728 28 H 0.176 0.824 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 8.897 14.495 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.030 0.970 5 C -0.591 4.591 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.194 1.194 13 O -0.265 6.265 14 C 0.362 3.638 15 O -0.415 6.415 16 C -0.125 4.125 17 C -0.190 4.190 18 C -0.360 4.360 19 C -0.132 4.132 20 S 0.701 5.299 21 N -0.384 5.384 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.193 0.807 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.708 8.570 15.544 20.232 hybrid contribution -0.071 -0.344 -2.393 2.418 sum -9.779 8.226 13.151 18.337 Atomic orbital electron populations 1.21715 0.96121 1.00832 1.00033 1.21877 0.94644 0.97831 1.02372 1.20523 0.94801 0.89494 0.78265 0.97017 1.21280 0.90375 1.40427 1.07036 0.92228 1.25778 1.04358 0.93649 0.94115 1.69992 1.37470 1.37640 1.09828 0.85199 0.77489 0.79038 0.77772 1.19102 1.19760 1.19393 1.86634 1.34695 1.62410 1.42732 1.20660 0.80171 0.76112 0.86855 1.90762 1.55917 1.59563 1.35262 1.20200 0.95196 1.05717 0.91393 1.21216 0.96243 1.00589 1.00920 1.26615 1.06533 1.04894 0.97971 1.20462 0.90989 0.98536 1.03239 1.79970 1.00611 1.34772 1.14501 1.72064 1.34831 1.24155 1.07374 0.91617 0.95078 0.93984 0.88999 0.93958 0.91823 0.80706 0.88150 0.88779 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.56 71.98 0.62 -5.38 16 2 C -0.13 -6.88 5.49 30.59 0.17 -6.71 16 3 C 0.22 12.92 2.25 29.85 0.07 12.98 16 4 H 0.01 0.77 7.16 -2.39 -0.02 0.75 16 5 C -0.55 -33.28 8.90 25.60 0.23 -33.05 16 6 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -53.23 11.29 21.44 0.24 -52.98 16 9 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 O -0.35 -18.99 9.70 -56.48 -0.55 -19.53 16 14 C 0.52 24.92 6.40 70.28 0.45 25.37 16 15 O -0.52 -26.29 13.84 19.87 0.27 -26.01 16 16 C 0.04 1.68 6.67 42.09 0.28 1.96 16 17 C -0.16 -4.45 9.92 21.83 0.22 -4.24 16 18 C -0.23 -4.37 6.58 24.93 0.16 -4.21 16 19 C -0.07 -0.66 10.46 71.24 0.75 0.08 16 20 S 0.55 11.40 23.20 -56.49 -1.31 10.09 16 21 N -0.55 -19.19 11.21 -75.24 -0.84 -20.03 16 22 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 23 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 24 H 0.04 2.01 7.79 -2.38 -0.02 1.99 16 25 H 0.09 5.22 5.95 -2.39 -0.01 5.21 16 26 H 0.04 2.19 8.14 -2.38 -0.02 2.18 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.18 4.63 7.99 -2.91 -0.02 4.61 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -73.09 282.41 4.37 -68.72 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.14 Total: 4.90 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 3.38 Total: -11.54 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -0.60 Total: -73.02 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.27 Total: -45.54 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 11.40 SS G_CDS: -1.31 Total: 10.09 kcal Total: -73.09 4.37 -68.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774259871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.431 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds