Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 119.96124 * 2 1 4 4 C 1.38730 * 119.96530 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.04468 * 179.97438 * 4 3 2 6 6 C 1.38729 * 119.90134 * 359.97438 * 4 3 2 7 7 C 1.50697 * 120.03070 * 179.97438 * 6 4 3 8 8 N 1.46894 * 109.47188 * 270.01880 * 7 6 4 9 9 C 1.46901 * 111.00203 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47630 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99511 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00531 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99820 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46881 * 90.00104 * 14 12 10 16 16 H 1.48498 * 109.47364 * 210.00013 * 14 12 10 17 17 H 1.48499 * 109.46907 * 330.00393 * 14 12 10 18 18 C 1.38233 * 119.93408 * 0.02562 * 6 4 3 19 19 Cl 1.73603 * 119.98632 * 180.02562 * 18 6 4 20 20 C 1.38220 * 119.96389 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47622 * 269.99593 * 1 2 3 22 22 H 1.08998 * 109.47561 * 30.00059 * 1 2 3 23 23 H 1.09002 * 109.47040 * 149.99652 * 1 2 3 24 24 H 1.07999 * 120.02025 * 0.02562 * 3 2 1 25 25 H 0.96702 * 114.00267 * 270.01584 * 5 4 3 26 26 H 1.08999 * 109.47616 * 30.02433 * 7 6 4 27 27 H 1.09006 * 109.47324 * 150.02173 * 7 6 4 28 28 H 1.00898 * 111.00326 * 303.95820 * 8 7 6 29 29 H 1.09001 * 109.47353 * 300.00841 * 9 8 7 30 30 H 1.09003 * 109.47223 * 60.00433 * 9 8 7 31 31 H 0.96997 * 119.99666 * 179.97438 * 13 12 10 32 32 H 1.08000 * 119.95453 * 0.27394 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5844 1.1972 0.0005 5 8 4.2647 2.3736 0.0000 6 6 4.2760 -0.0054 0.0016 7 6 5.7830 -0.0087 0.0016 8 7 6.2726 -0.0106 -1.3833 9 6 7.7411 -0.0144 -1.4225 10 6 8.2055 -0.0156 -2.8562 11 1 7.4820 -0.0132 -3.6581 12 6 9.5538 -0.0196 -3.1442 13 7 10.4348 -0.0220 -2.1677 14 14 10.1293 -0.0218 -4.9214 15 1 10.2859 1.3776 -5.3926 16 1 11.4332 -0.7257 -5.0186 17 1 9.1261 -0.7190 -5.7657 18 6 3.5815 -1.2006 0.0016 19 17 4.4457 -2.7063 0.0036 20 6 2.1974 -1.1975 -0.0005 21 1 -0.3634 -0.0001 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6568 2.1322 0.0004 25 1 4.4617 2.7136 -0.8835 26 1 6.1483 0.8807 0.5150 27 1 6.1444 -0.8993 0.5159 28 1 5.8954 -0.7913 -1.8992 29 1 8.1204 0.8747 -0.9188 30 1 8.1158 -0.9052 -0.9183 31 1 11.3833 -0.0252 -2.3704 32 1 1.6560 -2.1320 -0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840940938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -37.395373 kcal Electronic energy + Delta-G solvation = -16231.157186 eV Core-core repulsion = 13410.101038 eV Total energy + Delta-G solvation = -2821.056149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98956 -36.99914 -36.27206 -35.38160 -32.97522 -31.76485 -29.80552 -28.49424 -26.10699 -23.53343 -22.71322 -21.44665 -20.81224 -17.86654 -16.63689 -16.42684 -15.78664 -15.20960 -14.68830 -14.43030 -14.15056 -13.78793 -13.44068 -13.09345 -12.67173 -12.57422 -12.50012 -12.01687 -11.81934 -11.32653 -11.10732 -10.97840 -10.84067 -10.68773 -10.62108 -10.37150 -9.93157 -9.20697 -8.60664 -8.51244 -8.43683 -7.32477 -6.02502 -4.04625 1.12299 1.18390 2.20651 3.32566 3.38232 3.41726 3.45019 4.32037 4.43668 4.66514 4.92415 4.99285 5.11670 5.22630 5.33452 5.40209 5.56490 5.58351 5.71786 5.84322 5.94916 6.17784 6.31464 6.35539 6.54281 6.66077 7.24282 7.42929 7.77217 7.80828 8.11886 8.36393 8.58460 9.04191 9.60137 11.08597 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.005100 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.942827 B = 5488.637782 C = 5906.695941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.147 4.147 4 C 0.143 3.857 5 O -0.491 6.491 6 C -0.092 4.092 7 C 0.092 3.908 8 N -0.681 5.681 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.015 4.015 19 Cl -0.062 7.062 20 C -0.125 4.125 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.400 0.600 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.329 0.671 29 H 0.029 0.971 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 -0.638 5.019 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.165 4.165 4 C 0.097 3.903 5 O -0.303 6.303 6 C -0.093 4.093 7 C -0.038 4.038 8 N -0.311 5.311 9 C 0.068 3.932 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.042 4.042 19 Cl -0.033 7.033 20 C -0.144 4.144 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.149 0.851 25 H 0.258 0.742 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.145 0.855 29 H 0.047 0.953 30 H 0.006 0.994 31 H 0.071 0.929 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.426 -0.135 5.589 19.255 hybrid contribution 0.835 -0.985 -1.134 1.719 sum -17.591 -1.120 4.455 18.181 Atomic orbital electron populations 1.20765 0.90463 1.03002 1.02477 1.19596 0.96133 0.91950 0.99308 1.21350 0.93348 0.98408 1.03430 1.18027 0.89121 0.85060 0.98053 1.84705 1.76232 1.34960 1.34354 1.20248 0.97744 0.90931 1.00425 1.20838 0.87654 1.01648 0.93634 1.60799 1.12517 1.48907 1.08872 1.19570 0.80328 0.95942 0.97338 1.21157 0.91569 1.50425 0.92068 0.92016 1.24981 0.96706 0.95342 0.97479 1.69967 1.01478 1.50839 1.31383 0.86484 0.77972 0.78106 0.84750 1.20613 1.21301 1.19865 1.20702 0.92132 0.86991 1.04400 1.98380 1.77040 1.31120 1.96759 1.20842 0.91686 0.98567 1.03261 0.90988 0.91290 0.91313 0.85114 0.74187 0.89925 0.94465 0.85504 0.95261 0.99449 0.92902 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.07 -0.77 5.88 -104.65 -0.62 -1.38 16 3 C -0.15 -1.78 9.64 -39.42 -0.38 -2.16 16 4 C 0.14 2.10 6.68 -39.22 -0.26 1.84 16 5 O -0.49 -7.11 12.55 -19.42 -0.24 -7.35 16 6 C -0.09 -1.48 5.41 -104.44 -0.56 -2.05 16 7 C 0.09 1.73 5.19 -4.98 -0.03 1.70 16 8 N -0.68 -14.79 6.48 -116.34 -0.75 -15.54 16 9 C 0.19 5.16 5.44 -4.98 -0.03 5.13 16 10 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.01 -0.22 6.31 -39.52 -0.25 -0.47 16 19 Cl -0.06 -0.93 27.29 -51.86 -1.42 -2.35 16 20 C -0.12 -1.53 9.48 -39.52 -0.37 -1.90 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 23 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 24 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.40 4.66 9.06 45.56 0.41 5.08 16 26 H 0.08 1.62 7.53 -51.93 -0.39 1.23 16 27 H 0.04 0.72 6.90 -51.93 -0.36 0.36 16 28 H 0.33 7.08 8.71 -39.29 -0.34 6.74 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -31.02 294.32 -8.00 -39.02 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.18 Total: 4.48 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.56 Total: -13.20 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.02 Total: -41.81 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.24 Total: -7.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.42 Total: -2.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.02 -8.00 -39.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840940938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.625 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds