Wall clock time and date at job start Mon Mar 30 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38171 * 119.96124 * 2 1 4 4 C 1.38730 * 119.96530 * 179.97438 * 3 2 1 5 5 O 1.35897 * 120.04468 * 179.97438 * 4 3 2 6 6 C 1.38729 * 119.90134 * 359.97438 * 4 3 2 7 7 C 1.50697 * 120.03070 * 179.97438 * 6 4 3 8 8 N 1.46894 * 109.47188 * 270.01880 * 7 6 4 9 9 C 1.46901 * 111.00203 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47630 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99511 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00531 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99820 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46881 * 90.00104 * 14 12 10 16 16 H 1.48498 * 109.47364 * 210.00013 * 14 12 10 17 17 H 1.48499 * 109.46907 * 330.00393 * 14 12 10 18 18 C 1.38233 * 119.93408 * 0.02562 * 6 4 3 19 19 Cl 1.73603 * 119.98632 * 180.02562 * 18 6 4 20 20 C 1.38220 * 119.96389 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47622 * 269.99593 * 1 2 3 22 22 H 1.08998 * 109.47561 * 30.00059 * 1 2 3 23 23 H 1.09002 * 109.47040 * 149.99652 * 1 2 3 24 24 H 1.07999 * 120.02025 * 0.02562 * 3 2 1 25 25 H 0.96702 * 114.00267 * 270.01584 * 5 4 3 26 26 H 1.08999 * 109.47616 * 30.02433 * 7 6 4 27 27 H 1.09006 * 109.47324 * 150.02173 * 7 6 4 28 28 H 1.00898 * 111.00326 * 303.95820 * 8 7 6 29 29 H 1.09001 * 109.47353 * 300.00841 * 9 8 7 30 30 H 1.09003 * 109.47223 * 60.00433 * 9 8 7 31 31 H 0.96997 * 119.99666 * 179.97438 * 13 12 10 32 32 H 1.08000 * 119.95453 * 0.27394 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5844 1.1972 0.0005 5 8 4.2647 2.3736 0.0000 6 6 4.2760 -0.0054 0.0016 7 6 5.7830 -0.0087 0.0016 8 7 6.2726 -0.0106 -1.3833 9 6 7.7411 -0.0144 -1.4225 10 6 8.2055 -0.0156 -2.8562 11 1 7.4820 -0.0132 -3.6581 12 6 9.5538 -0.0196 -3.1442 13 7 10.4348 -0.0220 -2.1677 14 14 10.1293 -0.0218 -4.9214 15 1 10.2859 1.3776 -5.3926 16 1 11.4332 -0.7257 -5.0186 17 1 9.1261 -0.7190 -5.7657 18 6 3.5815 -1.2006 0.0016 19 17 4.4457 -2.7063 0.0036 20 6 2.1974 -1.1975 -0.0005 21 1 -0.3634 -0.0001 1.0276 22 1 -0.3634 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6568 2.1322 0.0004 25 1 4.4617 2.7136 -0.8835 26 1 6.1483 0.8807 0.5150 27 1 6.1444 -0.8993 0.5159 28 1 5.8954 -0.7913 -1.8992 29 1 8.1204 0.8747 -0.9188 30 1 8.1158 -0.9052 -0.9183 31 1 11.3833 -0.0252 -2.3704 32 1 1.6560 -2.1320 -0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840940938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:28 Heat of formation + Delta-G solvation = -59.407880 kcal Electronic energy + Delta-G solvation = -16232.111720 eV Core-core repulsion = 13410.101038 eV Total energy + Delta-G solvation = -2822.010683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06997 -38.10368 -37.43672 -37.03511 -34.82217 -33.21777 -30.83958 -29.92155 -27.74939 -25.01250 -23.78513 -23.38826 -21.97458 -19.02235 -18.56663 -17.59842 -17.13260 -16.58356 -16.35858 -15.79838 -15.59503 -15.07295 -14.70619 -14.52255 -13.93041 -13.61188 -13.57809 -13.47959 -13.27863 -12.85169 -12.67910 -12.60066 -12.40119 -12.08776 -11.95544 -11.85422 -11.53703 -11.27905 -10.67012 -9.65400 -9.57706 -9.18158 -8.23057 -6.34840 0.07770 0.13966 1.08626 1.41194 1.43188 1.54458 2.37930 2.43990 3.10357 3.30085 3.54165 3.76533 3.91821 4.00335 4.27455 4.38216 4.52180 4.57953 4.81638 4.87340 4.89541 5.05134 5.09957 5.22717 5.24594 5.36369 5.46336 5.58664 5.72567 5.98225 6.36160 6.62273 6.78992 6.84590 7.36033 8.88723 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.005100 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.942827 B = 5488.637782 C = 5906.695941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.143 4.143 4 C 0.132 3.868 5 O -0.503 6.503 6 C -0.121 4.121 7 C 0.101 3.899 8 N -0.670 5.670 9 C 0.210 3.790 10 C -0.534 4.534 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.024 4.024 19 Cl -0.074 7.074 20 C -0.124 4.124 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.157 0.843 25 H 0.409 0.591 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.331 0.669 29 H 0.002 0.998 30 H -0.042 1.042 31 H 0.265 0.735 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.123 -0.489 3.922 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.056 4.056 3 C -0.161 4.161 4 C 0.086 3.914 5 O -0.316 6.316 6 C -0.123 4.123 7 C -0.028 4.028 8 N -0.300 5.300 9 C 0.082 3.918 10 C -0.572 4.572 11 H 0.083 0.917 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.051 4.051 19 Cl -0.045 7.045 20 C -0.143 4.143 21 H 0.106 0.894 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.174 0.826 25 H 0.268 0.732 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.148 0.852 29 H 0.020 0.980 30 H -0.024 1.024 31 H 0.074 0.926 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.919 0.016 4.496 21.396 hybrid contribution 1.494 -1.009 -0.718 1.940 sum -19.425 -0.993 3.778 19.814 Atomic orbital electron populations 1.20879 0.87355 1.04493 1.03872 1.20075 0.98179 0.90919 0.96440 1.21629 0.92127 1.00083 1.02312 1.18248 0.90273 0.84384 0.98499 1.84675 1.76581 1.35008 1.35353 1.20032 0.95673 0.92540 1.04068 1.20659 0.90242 1.00402 0.91485 1.60659 1.09480 1.48860 1.11024 1.19210 0.83117 0.93207 0.96219 1.21492 0.92203 1.50772 0.92767 0.91669 1.25962 0.96732 0.94480 1.02445 1.70103 1.01955 1.51429 1.33977 0.85305 0.77564 0.78538 0.78719 1.19647 1.20749 1.18725 1.20852 0.93163 0.86008 1.05115 1.98373 1.77550 1.31684 1.96864 1.21168 0.90536 1.00263 1.02310 0.89438 0.89804 0.89939 0.82572 0.73159 0.91347 0.95436 0.85210 0.97984 1.02403 0.92588 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.06 -1.04 5.88 -19.88 -0.12 -1.16 16 3 C -0.14 -3.09 9.64 22.37 0.22 -2.87 16 4 C 0.13 3.76 6.68 22.51 0.15 3.91 16 5 O -0.50 -14.53 12.55 -92.39 -1.16 -15.69 16 6 C -0.12 -3.95 5.41 -19.75 -0.11 -4.06 16 7 C 0.10 4.00 5.19 85.56 0.44 4.44 16 8 N -0.67 -30.17 6.48 -521.99 -3.38 -33.55 16 9 C 0.21 11.65 5.44 85.56 0.47 12.12 16 10 C -0.53 -30.99 9.32 25.60 0.24 -30.75 16 11 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 14 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C -0.02 -0.70 6.31 22.31 0.14 -0.56 16 19 Cl -0.07 -2.22 27.29 -2.72 -0.07 -2.29 16 20 C -0.12 -2.74 9.48 22.31 0.21 -2.53 16 21 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 23 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 24 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 25 H 0.41 9.57 9.06 -74.06 -0.67 8.90 16 26 H 0.07 2.85 7.53 -2.39 -0.02 2.83 16 27 H 0.03 1.13 6.90 -2.38 -0.02 1.11 16 28 H 0.33 14.65 8.71 -89.70 -0.78 13.87 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -67.84 294.32 0.21 -67.63 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.30 Total: 15.66 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 2.82 Total: -21.33 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -3.10 Total: -90.66 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.16 Total: -15.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal Total: -67.84 0.21 -67.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840940938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.222 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds