Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35137 * 127.25269 * 2 1 4 4 C 1.37805 * 114.76317 * 180.17940 * 3 2 1 5 5 C 1.50701 * 121.56135 * 179.80402 * 4 3 2 6 6 O 1.45202 * 109.46859 * 359.74131 * 5 4 3 7 7 C 1.34230 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00262 * 180.27336 * 7 6 5 10 10 H 1.09000 * 109.47461 * 59.71633 * 9 7 6 11 11 C 1.53002 * 109.46796 * 299.72392 * 9 7 6 12 12 C 1.50693 * 109.47486 * 179.72204 * 9 7 6 13 13 H 1.07997 * 120.00072 * 359.97438 * 12 9 7 14 14 C 1.37886 * 120.00075 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99857 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47066 * 60.00093 * 16 14 12 18 18 H 1.48499 * 109.47137 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47333 * 300.00185 * 16 14 12 20 20 N 1.30085 * 116.87866 * 359.52732 * 4 3 2 21 21 S 1.69601 * 107.15305 * 0.25522 * 20 4 3 22 22 H 1.09000 * 109.47556 * 180.26202 * 1 2 3 23 23 H 1.09000 * 109.47029 * 300.26591 * 1 2 3 24 24 H 1.09006 * 109.47070 * 60.26424 * 1 2 3 25 25 H 1.08008 * 122.61698 * 359.95580 * 3 2 1 26 26 H 1.08998 * 109.47259 * 239.73586 * 5 4 3 27 27 H 1.09004 * 109.46840 * 119.73366 * 5 4 3 28 28 H 1.09003 * 109.46969 * 179.97438 * 11 9 7 29 29 H 1.09008 * 109.46845 * 299.99275 * 11 9 7 30 30 H 1.08993 * 109.47452 * 60.00035 * 11 9 7 31 31 H 0.96996 * 119.99508 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0757 0.0000 4 6 3.6704 0.7776 -0.0039 5 6 4.7182 1.8608 -0.0089 6 8 4.0708 3.1604 -0.0148 7 6 4.8696 4.2391 -0.0203 8 8 6.0701 4.1019 -0.0196 9 6 4.2693 5.6214 -0.0205 10 1 3.6529 5.7500 0.8693 11 6 3.4048 5.8017 -1.2699 12 6 5.3722 6.6482 -0.0202 13 1 6.4048 6.3315 -0.0196 14 6 5.0632 7.9919 -0.0208 15 7 3.8059 8.3775 -0.0211 16 14 6.4305 9.2647 -0.0198 17 1 7.2710 9.0893 -1.2315 18 1 5.8389 10.6268 -0.0213 19 1 7.2687 9.0899 1.1935 20 7 3.9937 -0.4824 0.0025 21 16 2.5483 -1.3696 0.0069 22 1 -0.3634 -1.0276 0.0047 23 1 -0.3633 0.5180 0.8876 24 1 -0.3633 0.5097 -0.8924 25 1 1.9533 2.0898 -0.0007 26 1 5.3402 1.7605 -0.8983 27 1 5.3401 1.7688 0.8817 28 1 2.9702 6.8014 -1.2698 29 1 4.0211 5.6732 -2.1598 30 1 2.6070 5.0591 -1.2701 31 1 3.5885 9.3228 -0.0212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850996499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = -57.795208 kcal Electronic energy + Delta-G solvation = -16218.724436 eV Core-core repulsion = 13398.827390 eV Total energy + Delta-G solvation = -2819.897046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93484 -38.87319 -35.74952 -33.93305 -33.26760 -30.72962 -28.56980 -27.77652 -25.23926 -23.18761 -22.04625 -20.04838 -19.35308 -17.88662 -16.65778 -16.23543 -16.02910 -15.71425 -14.88941 -14.60841 -14.12670 -13.48154 -13.37868 -13.19488 -12.80151 -12.67733 -12.42317 -12.01025 -11.55649 -11.15667 -11.06928 -10.85673 -10.73897 -10.49187 -10.42254 -10.27084 -10.08863 -9.43368 -9.21597 -9.09783 -8.66809 -8.47680 -6.13720 -4.19309 0.59562 1.38490 1.64084 2.36919 3.22495 3.31561 3.34067 3.35147 3.48258 4.32822 4.39615 4.80775 5.08155 5.19797 5.20717 5.26680 5.42144 5.44526 5.61542 5.78213 5.86462 6.06083 6.58814 6.63356 6.81048 6.83399 7.11093 7.38902 7.70344 7.90549 8.09790 8.75626 8.89293 9.46482 10.93597 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.045573 B = 0.004327 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.256639 B = 6469.101466 C = 6983.704034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.171 4.171 3 C -0.185 4.185 4 C 0.130 3.870 5 C 0.133 3.867 6 O -0.362 6.362 7 C 0.468 3.532 8 O -0.513 6.513 9 C 0.060 3.940 10 H 0.066 0.934 11 C -0.134 4.134 12 C -0.515 4.515 13 H 0.075 0.925 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 N -0.462 5.462 21 S 0.241 5.759 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.170 0.830 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.032 0.968 30 H 0.023 0.977 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 -15.007 -0.268 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.301 4.301 3 C -0.219 4.219 4 C -0.047 4.047 5 C 0.054 3.946 6 O -0.280 6.280 7 C 0.312 3.688 8 O -0.399 6.399 9 C 0.041 3.959 10 H 0.083 0.917 11 C -0.192 4.192 12 C -0.553 4.553 13 H 0.094 0.906 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.285 5.285 21 S 0.394 5.606 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.187 0.813 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.994 -16.958 -0.257 18.346 hybrid contribution 0.295 2.351 -0.005 2.370 sum -6.700 -14.607 -0.262 16.072 Atomic orbital electron populations 1.20298 0.86145 1.03280 1.03957 1.25486 1.02153 0.98102 1.04324 1.21177 0.91281 1.02335 1.07110 1.21154 0.94755 0.91726 0.97089 1.21010 0.90801 0.78768 1.04061 1.86569 1.42153 1.13983 1.85342 1.25448 0.86149 0.86886 0.70275 1.90523 1.17006 1.86657 1.45706 1.18777 0.97048 0.81861 0.98187 0.91657 1.21746 0.97564 1.03472 0.96398 1.21093 0.92929 0.89644 1.51604 0.90639 1.24928 0.95929 0.98394 0.94639 1.69863 1.16695 1.16338 1.50138 0.86424 0.81647 0.79687 0.78934 1.20067 1.21203 1.20056 1.76541 1.19190 1.06822 1.25985 1.83891 0.93450 1.14325 1.68908 0.90956 0.89697 0.89694 0.81313 0.89095 0.89081 0.88507 0.94914 0.95765 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 36.00 0.38 -0.20 16 2 C -0.17 -1.90 6.60 -35.41 -0.23 -2.13 16 3 C -0.19 -2.50 9.45 -40.84 -0.39 -2.89 16 4 C 0.13 1.96 6.71 -83.49 -0.56 1.40 16 5 C 0.13 2.19 6.05 36.01 0.22 2.41 16 6 O -0.36 -6.87 8.86 -39.26 -0.35 -7.22 16 7 C 0.47 10.64 7.25 36.00 0.26 10.90 16 8 O -0.51 -12.77 15.21 -18.76 -0.29 -13.05 16 9 C 0.06 1.48 2.74 -92.93 -0.25 1.23 16 10 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 11 C -0.13 -3.05 8.90 37.16 0.33 -2.72 16 12 C -0.51 -14.17 8.37 -34.44 -0.29 -14.45 16 13 H 0.08 2.17 6.76 -52.49 -0.35 1.81 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 16 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 N -0.46 -6.93 12.05 32.03 0.39 -6.54 16 21 S 0.24 2.80 23.72 -107.50 -2.55 0.25 16 22 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.17 2.27 7.31 -52.48 -0.38 1.89 16 26 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 27 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 28 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 287.40 15.07 4.33 4.33 Total: -1.00 -29.46 287.40 -7.06 -36.52 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.57 Total: -1.92 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.63 Total: -4.86 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 1.01 Total: -30.22 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.63 Total: -20.28 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.55 Total: 0.25 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.46 -7.06 -36.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850996499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.272 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds