Wall clock time and date at job start Mon Mar 30 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35137 * 127.25269 * 2 1 4 4 C 1.37805 * 114.76317 * 180.17940 * 3 2 1 5 5 C 1.50701 * 121.56135 * 179.80402 * 4 3 2 6 6 O 1.45202 * 109.46859 * 359.74131 * 5 4 3 7 7 C 1.34230 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00262 * 180.27336 * 7 6 5 10 10 H 1.09000 * 109.47461 * 59.71633 * 9 7 6 11 11 C 1.53002 * 109.46796 * 299.72392 * 9 7 6 12 12 C 1.50693 * 109.47486 * 179.72204 * 9 7 6 13 13 H 1.07997 * 120.00072 * 359.97438 * 12 9 7 14 14 C 1.37886 * 120.00075 * 179.97438 * 12 9 7 15 15 N 1.31514 * 119.99860 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99857 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47066 * 60.00093 * 16 14 12 18 18 H 1.48499 * 109.47137 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47333 * 300.00185 * 16 14 12 20 20 N 1.30085 * 116.87866 * 359.52732 * 4 3 2 21 21 S 1.69601 * 107.15305 * 0.25522 * 20 4 3 22 22 H 1.09000 * 109.47556 * 180.26202 * 1 2 3 23 23 H 1.09000 * 109.47029 * 300.26591 * 1 2 3 24 24 H 1.09006 * 109.47070 * 60.26424 * 1 2 3 25 25 H 1.08008 * 122.61698 * 359.95580 * 3 2 1 26 26 H 1.08998 * 109.47259 * 239.73586 * 5 4 3 27 27 H 1.09004 * 109.46840 * 119.73366 * 5 4 3 28 28 H 1.09003 * 109.46969 * 179.97438 * 11 9 7 29 29 H 1.09008 * 109.46845 * 299.99275 * 11 9 7 30 30 H 1.08993 * 109.47452 * 60.00035 * 11 9 7 31 31 H 0.96996 * 119.99508 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0757 0.0000 4 6 3.6704 0.7776 -0.0039 5 6 4.7182 1.8608 -0.0089 6 8 4.0708 3.1604 -0.0148 7 6 4.8696 4.2391 -0.0203 8 8 6.0701 4.1019 -0.0196 9 6 4.2693 5.6214 -0.0205 10 1 3.6529 5.7500 0.8693 11 6 3.4048 5.8017 -1.2699 12 6 5.3722 6.6482 -0.0202 13 1 6.4048 6.3315 -0.0196 14 6 5.0632 7.9919 -0.0208 15 7 3.8059 8.3775 -0.0211 16 14 6.4305 9.2647 -0.0198 17 1 7.2710 9.0893 -1.2315 18 1 5.8389 10.6268 -0.0213 19 1 7.2687 9.0899 1.1935 20 7 3.9937 -0.4824 0.0025 21 16 2.5483 -1.3696 0.0069 22 1 -0.3634 -1.0276 0.0047 23 1 -0.3633 0.5180 0.8876 24 1 -0.3633 0.5097 -0.8924 25 1 1.9533 2.0898 -0.0007 26 1 5.3402 1.7605 -0.8983 27 1 5.3401 1.7688 0.8817 28 1 2.9702 6.8014 -1.2698 29 1 4.0211 5.6732 -2.1598 30 1 2.6070 5.0591 -1.2701 31 1 3.5885 9.3228 -0.0212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850996499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:33 Heat of formation + Delta-G solvation = -74.208249 kcal Electronic energy + Delta-G solvation = -16219.436158 eV Core-core repulsion = 13398.827390 eV Total energy + Delta-G solvation = -2820.608768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53694 -40.09890 -37.42816 -35.92346 -34.15761 -32.70000 -29.88681 -28.64626 -27.25905 -24.98516 -23.09857 -21.76390 -20.51284 -18.99419 -18.48905 -17.96645 -17.61248 -17.38196 -16.45085 -15.85583 -15.61576 -14.78467 -14.60849 -14.32703 -14.20527 -13.77542 -13.57282 -13.42148 -13.26380 -12.96753 -12.76954 -12.59835 -12.28890 -12.04387 -12.00987 -11.87545 -11.55975 -11.11117 -11.07671 -10.52071 -10.38571 -9.66145 -8.19122 -6.31956 -0.39489 0.42471 0.59326 1.29359 1.39939 1.44463 1.45848 1.53468 1.87372 2.45021 3.11388 3.32836 3.82131 4.04264 4.07855 4.22280 4.27973 4.40655 4.71334 4.74607 4.83145 4.91249 4.95266 5.00990 5.18096 5.31960 5.45876 5.56417 5.70279 5.90262 6.11781 6.73788 6.98318 7.36741 8.86922 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.045573 B = 0.004327 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.256639 B = 6469.101466 C = 6983.704034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.151 4.151 3 C -0.214 4.214 4 C 0.120 3.880 5 C 0.133 3.867 6 O -0.350 6.350 7 C 0.477 3.523 8 O -0.540 6.540 9 C 0.054 3.946 10 H 0.056 0.944 11 C -0.121 4.121 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.025 3.975 15 N -0.907 5.907 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.274 1.274 19 H -0.275 1.275 20 N -0.500 5.500 21 S 0.286 5.714 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.166 0.834 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -15.895 -0.407 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.281 4.281 3 C -0.248 4.248 4 C -0.056 4.056 5 C 0.054 3.946 6 O -0.267 6.267 7 C 0.322 3.678 8 O -0.428 6.428 9 C 0.035 3.965 10 H 0.074 0.926 11 C -0.179 4.179 12 C -0.579 4.579 13 H 0.074 0.926 14 C -0.175 4.175 15 N -0.545 5.545 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.200 1.200 20 N -0.325 5.325 21 S 0.440 5.560 22 H 0.112 0.888 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.184 0.816 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.416 -17.853 -0.397 19.741 hybrid contribution 0.614 2.461 0.054 2.537 sum -7.802 -15.392 -0.343 17.260 Atomic orbital electron populations 1.20534 0.83236 1.05146 1.05067 1.25994 1.03885 0.97044 1.01167 1.21172 0.90992 1.03014 1.09583 1.20944 0.94895 0.91345 0.98427 1.21098 0.91585 0.77801 1.04094 1.86503 1.41232 1.14401 1.84527 1.24961 0.85671 0.87352 0.69801 1.90507 1.18066 1.87197 1.47064 1.18695 0.96539 0.82727 0.98568 0.92600 1.21579 0.97847 1.03260 0.95240 1.21234 0.92816 0.91046 1.52834 0.92589 1.25586 0.98035 0.99800 0.94066 1.69939 1.17806 1.16901 1.49848 0.85564 0.79191 0.77907 0.78720 1.20001 1.19882 1.20026 1.76345 1.22066 1.06990 1.27055 1.83713 0.91742 1.13116 1.67474 0.88767 0.88458 0.88432 0.81611 0.89184 0.89185 0.90333 0.95316 0.92832 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.46 71.24 0.75 -0.17 16 2 C -0.15 -2.97 6.60 24.97 0.16 -2.81 16 3 C -0.21 -5.52 9.45 21.45 0.20 -5.31 16 4 C 0.12 3.56 6.71 42.71 0.29 3.85 16 5 C 0.13 4.42 6.05 71.24 0.43 4.85 16 6 O -0.35 -13.28 8.86 -51.41 -0.46 -13.73 16 7 C 0.48 21.95 7.25 71.23 0.52 22.46 16 8 O -0.54 -27.44 15.21 21.94 0.33 -27.10 16 9 C 0.05 2.68 2.74 -12.29 -0.03 2.65 16 10 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 11 C -0.12 -5.51 8.90 71.98 0.64 -4.87 16 12 C -0.54 -30.28 8.37 25.60 0.21 -30.06 16 13 H 0.06 3.29 6.76 -2.91 -0.02 3.27 16 14 C 0.03 1.37 5.30 84.66 0.45 1.82 16 15 N -0.91 -49.27 11.32 21.45 0.24 -49.03 16 16 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 N -0.50 -14.60 12.05 -52.58 -0.63 -15.23 16 21 S 0.29 6.01 23.72 -56.49 -1.34 4.67 16 22 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.17 4.30 7.31 -2.91 -0.02 4.28 16 26 H 0.09 2.99 8.13 -2.39 -0.02 2.97 16 27 H 0.09 2.99 8.13 -2.38 -0.02 2.97 16 28 H 0.08 3.87 6.07 -2.39 -0.01 3.86 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 31 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -62.75 287.40 4.93 -57.82 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.14 Total: 4.82 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 3.62 Total: -7.59 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.39 Total: -64.25 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.12 Total: -40.83 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.34 Total: 4.67 kcal Total: -62.75 4.93 -57.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850996499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.384 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds