Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33647 * 122.74598 * 2 1 4 4 S 1.76194 * 107.92243 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28488 * 359.97438 * 4 3 2 6 6 C 1.50693 * 124.91391 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47402 * 270.02635 * 6 5 4 8 8 C 1.34230 * 117.00173 * 180.02562 * 7 6 5 9 9 O 1.20822 * 120.00010 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99763 * 179.97438 * 8 7 6 11 11 H 1.08996 * 109.46822 * 60.00506 * 10 8 7 12 12 C 1.52997 * 109.47238 * 299.99723 * 10 8 7 13 13 C 1.50708 * 109.46685 * 179.97438 * 10 8 7 14 14 H 1.07995 * 119.99755 * 0.02562 * 13 10 8 15 15 C 1.37873 * 119.99729 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46921 * 60.00420 * 17 15 13 19 19 H 1.48496 * 109.46933 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46946 * 300.00103 * 17 15 13 21 21 N 1.29022 * 110.16251 * 0.24565 * 5 4 3 22 22 H 1.09008 * 109.46819 * 90.00308 * 1 2 3 23 23 H 1.09003 * 109.47287 * 210.00189 * 1 2 3 24 24 H 1.09000 * 109.47863 * 330.00465 * 1 2 3 25 25 H 1.07998 * 126.03483 * 0.03061 * 3 2 1 26 26 H 1.09007 * 109.47172 * 150.02997 * 6 5 4 27 27 H 1.09003 * 109.47604 * 30.03104 * 6 5 4 28 28 H 1.09002 * 109.47153 * 180.02562 * 12 10 8 29 29 H 1.09001 * 109.46832 * 60.00314 * 12 10 8 30 30 H 1.09004 * 109.47261 * 300.00295 * 12 10 8 31 31 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1241 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9817 -0.0002 6 6 4.4836 -2.1268 -0.0010 7 8 4.7975 -2.4943 -1.3702 8 6 5.6621 -3.5058 -1.5468 9 8 6.1404 -4.0659 -0.5890 10 6 6.0352 -3.9436 -2.9397 11 1 6.4930 -3.1099 -3.4721 12 6 4.7787 -4.3970 -3.6857 13 6 7.0137 -5.0872 -2.8616 14 1 7.3330 -5.4598 -1.8996 15 6 7.5004 -5.6582 -4.0183 16 7 7.1112 -5.2046 -5.1898 17 14 8.7138 -7.0751 -3.9215 18 1 8.0915 -8.2110 -3.1951 19 1 9.0815 -7.5066 -5.2941 20 1 9.9335 -6.6338 -3.1985 21 7 2.2200 -1.1082 -0.0048 22 1 -0.3633 -0.0001 -1.0278 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3635 0.8900 0.5137 25 1 1.8390 2.1308 0.0005 26 1 4.0438 -2.9817 0.5128 27 1 5.3964 -1.8246 0.5124 28 1 5.0487 -4.7140 -4.6930 29 1 4.0714 -3.5696 -3.7421 30 1 4.3209 -5.2307 -3.1532 31 1 7.4533 -5.6066 -6.0036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118408019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = -68.645179 kcal Electronic energy + Delta-G solvation = -16125.631917 eV Core-core repulsion = 13305.264381 eV Total energy + Delta-G solvation = -2820.367536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52274 -40.81711 -37.64364 -35.94863 -33.64797 -32.62660 -29.73240 -28.47762 -27.29707 -25.22135 -23.64528 -21.71721 -20.81600 -18.93667 -18.63598 -18.08989 -17.58621 -17.26572 -16.50088 -15.92315 -15.68333 -15.07174 -14.71093 -14.55858 -13.94599 -13.84893 -13.50222 -13.32287 -13.19437 -12.97841 -12.78216 -12.63263 -12.32278 -12.27349 -12.05199 -11.82416 -11.18228 -11.14043 -10.76404 -10.54815 -10.47489 -9.78500 -8.20238 -6.34090 -0.51189 0.27435 0.69462 1.35733 1.42533 1.45894 1.47103 1.55412 2.07172 2.44486 2.94817 3.09998 3.72354 4.00824 4.06282 4.23579 4.30403 4.35010 4.65599 4.78513 4.81783 4.86660 4.92704 4.95124 5.28594 5.33567 5.40589 5.66705 5.85200 6.07269 6.67467 6.71949 6.94853 7.34815 8.86168 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.044646 B = 0.004293 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.999923 B = 6520.608080 C = 6695.497720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.038 3.962 3 C -0.242 4.242 4 S 0.186 5.814 5 C 0.011 3.989 6 C 0.137 3.863 7 O -0.359 6.359 8 C 0.477 3.523 9 O -0.535 6.535 10 C 0.052 3.948 11 H 0.054 0.946 12 C -0.120 4.120 13 C -0.541 4.541 14 H 0.059 0.941 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.965 3.035 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.272 1.272 21 N -0.482 5.482 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.218 0.782 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 14.418 8.806 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.381 4.381 4 S 0.440 5.560 5 C -0.265 4.265 6 C 0.060 3.940 7 O -0.276 6.276 8 C 0.322 3.678 9 O -0.424 6.424 10 C 0.033 3.967 11 H 0.072 0.928 12 C -0.178 4.178 13 C -0.578 4.578 14 H 0.077 0.923 15 C -0.177 4.177 16 N -0.547 5.547 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.199 1.199 20 H -0.197 1.197 21 N -0.200 5.200 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.123 0.877 25 H 0.235 0.765 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.527 14.249 8.914 19.320 hybrid contribution -0.177 -0.954 0.073 0.973 sum -9.704 13.295 8.988 18.754 Atomic orbital electron populations 1.20468 0.84773 1.04424 1.03793 1.20876 0.99924 0.86111 1.02520 1.27437 0.94417 1.05337 1.10911 1.83826 1.07636 0.99441 1.65078 1.26236 0.93646 0.99175 1.07467 1.21228 0.96258 0.94350 0.82177 1.86618 1.59642 1.50418 1.30915 1.24917 0.73618 0.75103 0.94156 1.90485 1.52942 1.54890 1.44094 1.18710 0.96205 0.97362 0.84420 0.92795 1.21564 0.94802 0.98835 1.02623 1.21225 1.26012 1.16982 0.93604 0.92278 1.25652 0.97990 0.99446 0.94606 1.69956 1.44353 1.42654 0.97780 0.85499 0.79029 0.79048 0.77423 1.19918 1.19913 1.19747 1.66075 1.05019 1.34113 1.14821 0.89994 0.91285 0.87720 0.76541 0.89355 0.87892 0.90148 0.93834 0.95264 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.31 71.24 0.73 -0.43 16 2 C 0.04 0.86 6.74 41.52 0.28 1.14 16 3 C -0.24 -4.33 11.13 66.78 0.74 -3.58 16 4 S 0.19 4.04 23.18 -56.49 -1.31 2.73 16 5 C 0.01 0.32 7.03 88.52 0.62 0.94 16 6 C 0.14 4.62 6.04 71.23 0.43 5.05 16 7 O -0.36 -14.86 10.11 -51.41 -0.52 -15.38 16 8 C 0.48 22.91 7.25 71.24 0.52 23.43 16 9 O -0.54 -27.55 15.21 21.98 0.33 -27.21 16 10 C 0.05 2.72 2.74 -12.28 -0.03 2.69 16 11 H 0.05 2.90 8.14 -2.39 -0.02 2.88 16 12 C -0.12 -5.87 8.90 71.98 0.64 -5.23 16 13 C -0.54 -30.84 8.38 25.60 0.21 -30.63 16 14 H 0.06 3.51 6.76 -2.91 -0.02 3.49 16 15 C 0.02 1.27 5.30 84.65 0.45 1.72 16 16 N -0.91 -50.67 11.32 21.45 0.24 -50.42 16 17 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 N -0.48 -14.71 10.53 -179.41 -1.89 -16.60 16 22 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 0.93 8.12 -2.39 -0.02 0.92 16 25 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.09 3.05 8.13 -2.38 -0.02 3.03 16 27 H 0.10 3.10 8.13 -2.39 -0.02 3.08 16 28 H 0.08 4.19 6.07 -2.39 -0.01 4.18 16 29 H 0.04 1.89 8.11 -2.39 -0.02 1.87 16 30 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -66.30 289.29 4.62 -61.68 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.14 Total: 4.24 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.60 Total: -4.90 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.65 Total: -67.02 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.19 Total: -42.60 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.31 Total: 2.73 kcal Total: -66.30 4.62 -61.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118408019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -66.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds