Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36024 * 117.00025 * 2 1 4 4 C 1.38674 * 119.98485 * 0.02562 * 3 2 1 5 5 C 1.38116 * 120.03167 * 179.97438 * 4 3 2 6 6 C 1.38878 * 120.00114 * 0.02562 * 5 4 3 7 7 N 1.39933 * 120.01443 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00302 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46553 * 325.00484 * 8 7 6 10 10 C 1.52995 * 109.46988 * 84.99831 * 8 7 6 11 11 C 1.50694 * 109.47456 * 205.00316 * 8 7 6 12 12 H 1.08008 * 120.00127 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00048 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99799 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00103 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.46914 * 90.00011 * 15 13 11 17 17 H 1.48497 * 109.47226 * 209.99826 * 15 13 11 18 18 H 1.48493 * 109.47055 * 330.00087 * 15 13 11 19 19 C 1.38839 * 119.96913 * 359.68515 * 6 5 4 20 20 C 1.38216 * 119.96952 * 0.61181 * 19 6 5 21 21 Cl 1.73599 * 120.00468 * 179.68433 * 20 19 6 22 22 H 1.09003 * 109.47004 * 60.00207 * 1 2 3 23 23 H 1.09007 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47439 * 300.00415 * 1 2 3 25 25 H 1.07999 * 119.98177 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.00018 * 179.97438 * 5 4 3 27 27 H 0.97000 * 120.00335 * 0.02562 * 7 6 5 28 28 H 1.08999 * 109.47408 * 180.02562 * 10 8 7 29 29 H 1.09000 * 109.47297 * 300.00500 * 10 8 7 30 30 H 1.09007 * 109.47363 * 60.00760 * 10 8 7 31 31 H 0.97002 * 119.99973 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.01539 * 180.30074 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2909 2.3748 0.0005 5 6 1.9170 3.6059 0.0011 6 6 3.3038 3.6798 0.0005 7 7 3.9383 4.9270 0.0005 8 6 5.4013 5.0046 -0.0006 9 1 5.8091 4.1828 0.5881 10 6 5.9161 4.9066 -1.4380 11 6 5.8353 6.3167 0.6001 12 1 5.0953 7.0226 0.9476 13 6 7.1769 6.6162 0.7061 14 7 7.5556 7.7611 1.2308 15 14 8.4567 5.3951 0.1057 16 1 8.7642 5.6623 -1.3223 17 1 9.6945 5.5379 0.9137 18 1 7.9289 4.0145 0.2485 19 6 4.0603 2.5156 0.0061 20 6 3.4326 1.2842 -0.0007 21 17 4.3776 -0.1720 -0.0020 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2124 2.3177 0.0005 26 1 1.3280 4.5112 0.0011 27 1 3.4096 5.7402 0.0013 28 1 7.0045 4.9638 -1.4389 29 1 5.6021 3.9575 -1.8725 30 1 5.5083 5.7283 -2.0269 31 1 8.4995 7.9717 1.3057 32 1 5.1388 2.5722 0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032014887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = -30.950639 kcal Electronic energy + Delta-G solvation = -16490.642465 eV Core-core repulsion = 13669.865781 eV Total energy + Delta-G solvation = -2820.776684 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05818 -39.13890 -37.53237 -36.71323 -34.42543 -32.21556 -31.56790 -29.25889 -27.56183 -27.06196 -24.02144 -23.19451 -21.63248 -19.47488 -18.89667 -17.69372 -17.53784 -16.72006 -16.55746 -15.91721 -15.34420 -15.07905 -14.77364 -14.55782 -14.42742 -14.07223 -13.99188 -13.63083 -13.17214 -12.81426 -12.57441 -12.54045 -12.20076 -12.03005 -11.94722 -11.75069 -11.47732 -11.23090 -10.86162 -10.30378 -9.77983 -8.36614 -7.96509 -6.42341 0.21926 0.63376 1.22746 1.29839 1.36175 1.44704 2.26940 2.46295 2.78118 2.79039 3.00276 3.86086 4.10553 4.28239 4.41948 4.49382 4.51918 4.55716 4.58628 4.71597 4.79160 4.83273 4.88477 5.02720 5.27725 5.33365 5.41380 5.51079 5.59886 6.02828 6.49029 6.56222 6.67512 7.07195 7.27210 8.79530 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.005817 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.699742 B = 4812.463022 C = 5486.110682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.058 3.942 4 C -0.134 4.134 5 C -0.160 4.160 6 C 0.197 3.803 7 N -0.723 5.723 8 C 0.248 3.752 9 H 0.029 0.971 10 C -0.161 4.161 11 C -0.532 4.532 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.939 5.939 15 Si 0.942 3.058 16 H -0.263 1.263 17 H -0.296 1.296 18 H -0.250 1.250 19 C -0.180 4.180 20 C -0.029 4.029 21 Cl -0.071 7.071 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.168 0.832 26 H 0.150 0.850 27 H 0.401 0.599 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 -14.348 -4.369 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.011 3.989 4 C -0.153 4.153 5 C -0.182 4.182 6 C 0.091 3.909 7 N -0.350 5.350 8 C 0.143 3.857 9 H 0.047 0.953 10 C -0.220 4.220 11 C -0.570 4.570 12 H 0.065 0.935 13 C -0.175 4.175 14 N -0.579 5.579 15 Si 0.769 3.231 16 H -0.189 1.189 17 H -0.224 1.224 18 H -0.174 1.174 19 C -0.204 4.204 20 C -0.057 4.057 21 Cl -0.042 7.042 22 H 0.084 0.916 23 H 0.133 0.867 24 H 0.083 0.917 25 H 0.185 0.815 26 H 0.167 0.833 27 H 0.237 0.763 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.105 -14.554 -4.318 20.055 hybrid contribution 0.819 0.396 -0.012 0.909 sum -12.286 -14.159 -4.330 19.240 Atomic orbital electron populations 1.23313 0.76668 1.05327 1.02232 1.86100 1.23128 1.25587 1.89692 1.18425 0.89813 0.86001 1.04674 1.21182 1.01037 0.89945 1.03145 1.20756 0.91457 0.99120 1.06913 1.17945 0.92191 0.85768 0.95025 1.44860 1.05933 1.04127 1.80034 1.18759 0.78692 0.95668 0.92611 0.95316 1.22462 0.99368 1.01034 0.99118 1.21299 0.92818 1.02377 1.40523 0.93488 1.25645 1.00481 0.96693 0.94690 1.70002 1.17251 1.24468 1.46151 0.85958 0.78154 0.80699 0.78294 1.18857 1.22376 1.17387 1.20378 1.00056 0.89629 1.10385 1.19946 0.89261 0.87460 1.09054 1.98322 1.72468 1.36304 1.97085 0.91615 0.86668 0.91741 0.81513 0.83278 0.76348 0.94239 0.92672 0.92447 0.92189 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.18 9.95 -93.83 -0.93 -9.11 16 3 C 0.06 1.61 6.68 22.51 0.15 1.76 16 4 C -0.13 -3.13 9.03 22.35 0.20 -2.93 16 5 C -0.16 -4.24 9.89 22.39 0.22 -4.02 16 6 C 0.20 6.62 6.64 38.14 0.25 6.87 16 7 N -0.72 -27.37 5.25 -322.38 -1.69 -29.06 16 8 C 0.25 11.07 1.85 44.24 0.08 11.15 16 9 H 0.03 1.35 5.53 -2.39 -0.01 1.34 16 10 C -0.16 -6.60 8.92 71.98 0.64 -5.96 16 11 C -0.53 -28.75 9.31 25.60 0.24 -28.52 16 12 H 0.05 2.77 7.98 -2.91 -0.02 2.75 16 13 C 0.02 1.34 5.45 84.65 0.46 1.80 16 14 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 15 Si 0.94 43.44 24.38 68.60 1.67 45.11 16 16 H -0.26 -11.49 6.87 99.48 0.68 -10.80 16 17 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 18 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 19 C -0.18 -6.32 8.65 22.41 0.19 -6.12 16 20 C -0.03 -0.94 6.33 22.40 0.14 -0.80 16 21 Cl -0.07 -2.16 28.50 -2.72 -0.08 -2.23 16 22 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 23 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 25 H 0.17 2.59 6.29 -2.91 -0.02 2.57 16 26 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 27 H 0.40 14.33 8.55 -92.71 -0.79 13.54 16 28 H 0.04 1.66 3.28 -2.39 -0.01 1.65 16 29 H 0.05 2.01 7.76 -2.39 -0.02 1.99 16 30 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.12 4.63 6.15 -2.91 -0.02 4.61 16 Total: -1.00 -63.18 278.59 3.24 -59.94 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.28 Total: 17.02 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.70 Total: -25.37 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.39 Total: -85.35 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.93 Total: -9.11 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.23 kcal Total: -63.18 3.24 -59.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032014887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.986 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds