Wall clock time and date at job start Mon Mar 30 2020 06:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 C 1.76193 * 103.00267 * 180.02562 * 12 11 10 14 14 C 1.38840 * 120.00989 * 359.72126 * 13 12 11 15 15 C 1.38125 * 120.01860 * 179.77157 * 14 13 12 16 16 C 1.38868 * 120.03900 * 0.50772 * 15 14 13 17 17 N 1.39991 * 119.98936 * 179.72648 * 16 15 14 18 18 C 1.38870 * 120.02100 * 359.74740 * 16 15 14 19 19 C 1.38241 * 119.98712 * 359.97438 * 18 16 15 20 20 F 1.35092 * 120.02110 * 179.97438 * 19 18 16 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.08000 * 119.99408 * 0.02562 * 14 13 12 29 29 H 1.07996 * 119.98294 * 180.25907 * 15 14 13 30 30 H 0.97005 * 119.99982 * 180.02562 * 17 16 15 31 31 H 0.97004 * 119.99993 * 0.02562 * 17 16 15 32 32 H 1.08001 * 120.00650 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 6 1.6115 -7.7828 0.0019 14 6 0.2319 -7.6266 0.0071 15 6 -0.5893 -8.7372 0.0023 16 6 -0.0361 -10.0109 0.0028 17 7 -0.8694 -11.1358 0.0037 18 6 1.3436 -10.1691 0.0029 19 6 2.1664 -9.0582 0.0019 20 9 3.5087 -9.2113 0.0025 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 -0.1993 -6.6364 0.0109 29 1 -1.6624 -8.6150 0.0022 30 1 -0.4830 -12.0256 0.0044 31 1 -1.8331 -11.0254 0.0036 32 1 1.7736 -11.1598 0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037194009.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:11 Heat of formation + Delta-G solvation = -41.031363 kcal Electronic energy + Delta-G solvation = -15459.128399 eV Core-core repulsion = 12652.331078 eV Total energy + Delta-G solvation = -2806.797321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -48.87411 -39.22500 -34.69639 -34.45189 -32.08950 -30.73226 -28.97125 -27.49999 -23.76158 -22.83223 -22.45205 -20.34056 -18.00406 -17.50465 -17.15303 -16.31182 -15.65515 -15.62807 -15.27243 -14.65234 -14.62758 -14.26909 -13.95315 -13.17316 -13.13897 -12.50894 -12.39595 -11.95122 -11.79304 -11.44489 -11.07941 -10.88061 -10.87231 -10.52044 -9.93684 -9.82692 -9.34588 -9.11537 -8.97356 -8.62939 -8.38044 -6.91042 -6.03093 -4.05426 1.08649 1.20462 1.78606 2.75862 3.30822 3.38357 3.43212 3.46974 3.49540 4.29000 4.44849 4.61488 4.89981 5.18959 5.33087 5.38143 5.43273 5.54148 5.70746 5.90632 5.95179 6.08119 6.09779 6.50484 6.56036 6.66458 6.98253 7.12639 7.42667 7.61649 7.73085 7.95815 8.37457 9.01151 9.58978 11.08288 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.042776 B = 0.003665 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.409053 B = 7637.071939 C = 8265.731371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.096 4.096 11 C -0.096 4.096 12 S -0.122 6.122 13 C -0.168 4.168 14 C -0.057 4.057 15 C -0.186 4.186 16 C 0.230 3.770 17 N -0.876 5.876 18 C -0.219 4.219 19 C 0.159 3.841 20 F -0.129 7.129 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.400 0.600 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 -21.732 0.010 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.244 4.244 12 S 0.122 5.878 13 C -0.283 4.283 14 C -0.082 4.082 15 C -0.210 4.210 16 C 0.123 3.877 17 N -0.415 5.415 18 C -0.244 4.244 19 C 0.132 3.868 20 F -0.108 7.108 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.226 0.774 31 H 0.229 0.771 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.835 -21.431 0.011 21.448 hybrid contribution -1.054 0.432 -0.001 1.139 sum -1.889 -21.000 0.011 21.084 Atomic orbital electron populations 1.69970 1.06070 1.26582 1.50876 1.25023 0.94868 0.99325 0.95229 0.86514 0.80181 0.83629 0.77581 1.19648 1.20987 1.20992 1.21258 0.93195 0.90812 1.50604 0.92443 1.19105 0.93764 0.90754 0.97490 1.21484 0.99277 0.90944 1.01793 1.23951 0.99865 0.95632 1.04953 1.85666 1.13813 0.96001 1.92282 1.21677 0.97557 0.96233 1.12874 1.20939 0.90846 0.99569 0.96797 1.20555 0.99983 0.90397 1.10086 1.17422 0.89338 0.87666 0.93239 1.42481 1.08117 1.05679 1.85268 1.20286 0.91859 0.98049 1.14232 1.16747 0.77003 0.91966 1.01042 1.91505 1.29520 1.96295 1.93465 0.93013 0.96332 0.96326 0.92183 0.92174 0.89836 0.89829 0.84468 0.85311 0.77354 0.77115 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.70 4.97 -27.89 -0.14 0.57 16 10 C -0.10 -1.97 5.16 -26.73 -0.14 -2.11 16 11 C -0.10 -1.64 4.33 37.16 0.16 -1.48 16 12 S -0.12 -2.03 21.52 -107.50 -2.31 -4.34 16 13 C -0.17 -2.49 6.11 -39.04 -0.24 -2.73 16 14 C -0.06 -0.74 9.36 -39.40 -0.37 -1.11 16 15 C -0.19 -1.99 9.89 -39.39 -0.39 -2.38 16 16 C 0.23 2.28 6.76 -83.66 -0.57 1.72 16 17 N -0.88 -5.44 9.10 32.46 0.30 -5.14 16 18 C -0.22 -2.44 9.87 -39.35 -0.39 -2.83 16 19 C 0.16 2.21 7.27 -39.26 -0.29 1.93 16 20 F -0.13 -1.93 16.75 2.25 0.04 -1.89 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.37 7.73 -51.92 -0.40 0.96 16 27 H 0.08 1.37 7.75 -51.92 -0.40 0.97 16 28 H 0.14 1.72 5.86 -52.49 -0.31 1.42 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.40 1.75 8.84 -40.82 -0.36 1.39 16 31 H 0.40 1.77 8.84 -40.82 -0.36 1.41 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -31.01 293.57 -8.51 -39.52 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.91 Total: -1.38 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -2.76 Total: -21.87 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 1.03 Total: -31.06 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.31 Total: -4.34 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.01 -8.51 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037194009.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds