Wall clock time and date at job start Mon Mar 30 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 C 1.76193 * 103.00267 * 180.02562 * 12 11 10 14 14 C 1.38840 * 120.00989 * 359.72126 * 13 12 11 15 15 C 1.38125 * 120.01860 * 179.77157 * 14 13 12 16 16 C 1.38868 * 120.03900 * 0.50772 * 15 14 13 17 17 N 1.39991 * 119.98936 * 179.72648 * 16 15 14 18 18 C 1.38870 * 120.02100 * 359.74740 * 16 15 14 19 19 C 1.38241 * 119.98712 * 359.97438 * 18 16 15 20 20 F 1.35092 * 120.02110 * 179.97438 * 19 18 16 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.08000 * 119.99408 * 0.02562 * 14 13 12 29 29 H 1.07996 * 119.98294 * 180.25907 * 15 14 13 30 30 H 0.97005 * 119.99982 * 180.02562 * 17 16 15 31 31 H 0.97004 * 119.99993 * 0.02562 * 17 16 15 32 32 H 1.08001 * 120.00650 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 6 1.6115 -7.7828 0.0019 14 6 0.2319 -7.6266 0.0071 15 6 -0.5893 -8.7372 0.0023 16 6 -0.0361 -10.0109 0.0028 17 7 -0.8694 -11.1358 0.0037 18 6 1.3436 -10.1691 0.0029 19 6 2.1664 -9.0582 0.0019 20 9 3.5087 -9.2113 0.0025 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 -0.1993 -6.6364 0.0109 29 1 -1.6624 -8.6150 0.0022 30 1 -0.4830 -12.0256 0.0044 31 1 -1.8331 -11.0254 0.0036 32 1 1.7736 -11.1598 0.0029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037194009.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:09 Heat of formation + Delta-G solvation = -59.246261 kcal Electronic energy + Delta-G solvation = -15459.918256 eV Core-core repulsion = 12652.331078 eV Total energy + Delta-G solvation = -2807.587178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.079 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.94784 -40.10015 -36.40710 -35.40029 -34.08114 -31.67727 -29.86805 -29.33457 -25.53184 -23.89944 -23.45134 -22.07935 -19.01102 -18.62445 -18.21583 -18.03982 -16.73600 -16.70816 -16.45058 -16.20858 -16.08832 -15.53525 -14.99668 -14.53877 -14.09316 -14.06383 -13.76855 -13.64069 -13.27372 -12.79689 -12.76583 -12.42052 -12.27991 -12.02671 -11.63713 -11.47232 -11.21949 -11.02731 -10.55952 -9.90996 -9.54618 -8.20817 -7.98854 -6.31249 0.15711 0.26293 0.54941 1.40937 1.41509 1.50648 1.54972 2.41720 2.58613 2.78743 3.12901 3.37637 3.72614 3.98534 4.02964 4.08290 4.28525 4.49393 4.58498 4.79008 4.82838 4.92723 4.99067 5.11598 5.12373 5.19859 5.49447 5.68079 5.68322 5.82576 6.22892 6.46183 6.84260 6.97161 7.37813 8.91096 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.042776 B = 0.003665 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.409053 B = 7637.071939 C = 8265.731371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.083 4.083 11 C -0.082 4.082 12 S -0.149 6.149 13 C -0.193 4.193 14 C -0.065 4.065 15 C -0.185 4.185 16 C 0.244 3.756 17 N -0.856 5.856 18 C -0.219 4.219 19 C 0.141 3.859 20 F -0.142 7.142 21 H 0.264 0.736 22 H 0.000 1.000 23 H 0.000 1.000 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.411 0.589 31 H 0.413 0.587 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -23.232 0.011 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.122 4.122 11 C -0.231 4.231 12 S 0.094 5.906 13 C -0.309 4.309 14 C -0.089 4.089 15 C -0.210 4.210 16 C 0.134 3.866 17 N -0.396 5.396 18 C -0.244 4.244 19 C 0.115 3.885 20 F -0.120 7.120 21 H 0.073 0.927 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.173 0.827 30 H 0.241 0.759 31 H 0.244 0.756 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.457 -22.986 0.012 23.033 hybrid contribution -0.987 0.706 -0.001 1.213 sum -2.444 -22.281 0.011 22.415 Atomic orbital electron populations 1.70083 1.07642 1.27769 1.51587 1.25935 0.95794 1.03205 0.94664 0.85413 0.79039 0.78851 0.77849 1.18817 1.20270 1.20281 1.21691 0.93566 0.92327 1.50679 0.92349 1.18969 0.94092 0.92060 0.95551 1.21193 0.98210 0.91224 1.01542 1.23643 0.99522 0.94397 1.05495 1.85578 1.14590 0.97190 1.93269 1.21620 0.97905 0.95240 1.16089 1.21028 0.90374 1.00453 0.97048 1.20834 1.01102 0.89990 1.09034 1.17497 0.89309 0.88497 0.91267 1.42488 1.08585 1.05279 1.83238 1.20518 0.92196 0.98199 1.13521 1.17039 0.76870 0.92537 1.02048 1.91469 1.30461 1.96354 1.93730 0.92685 0.98210 0.98204 0.92397 0.92389 0.89312 0.89312 0.84689 0.82671 0.75879 0.75634 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.68 4.97 29.85 0.15 1.83 16 10 C -0.08 -3.48 5.16 30.60 0.16 -3.32 16 11 C -0.08 -2.88 4.33 71.98 0.31 -2.57 16 12 S -0.15 -5.04 21.52 -56.49 -1.22 -6.26 16 13 C -0.19 -5.70 6.11 22.62 0.14 -5.56 16 14 C -0.07 -1.63 9.36 22.39 0.21 -1.42 16 15 C -0.19 -3.49 9.89 22.39 0.22 -3.27 16 16 C 0.24 4.06 6.76 38.14 0.26 4.32 16 17 N -0.86 -7.13 9.10 -51.22 -0.47 -7.60 16 18 C -0.22 -4.37 9.87 22.42 0.22 -4.15 16 19 C 0.14 3.83 7.27 22.48 0.16 4.00 16 20 F -0.14 -4.22 16.75 44.97 0.75 -3.47 16 21 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 22 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 23 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.09 2.96 7.73 -2.39 -0.02 2.94 16 27 H 0.09 2.96 7.75 -2.39 -0.02 2.94 16 28 H 0.14 3.35 5.86 -2.91 -0.02 3.33 16 29 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.41 1.87 8.84 -92.70 -0.82 1.05 16 31 H 0.41 1.87 8.84 -92.71 -0.82 1.05 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -67.31 293.57 3.42 -63.89 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -0.49 Total: 3.32 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 2.52 Total: -40.49 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.18 Total: -63.43 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.75 Total: -3.47 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.22 Total: -6.26 kcal Total: -67.31 3.42 -63.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037194009.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.647 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds