Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46500 * 109.46888 * 120.00138 * 2 1 3 5 5 C 1.46494 * 120.00174 * 305.38085 * 4 2 1 6 6 C 1.50707 * 109.46847 * 270.00020 * 5 4 2 7 7 H 1.07994 * 120.00435 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99600 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99824 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00159 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47211 * 90.00342 * 10 8 6 12 12 H 1.48500 * 109.47165 * 210.00028 * 10 8 6 13 13 H 1.48501 * 109.47402 * 330.00488 * 10 8 6 14 14 C 1.38561 * 119.99811 * 125.38275 * 4 2 1 15 15 C 1.39565 * 120.52180 * 10.73263 * 14 4 2 16 16 C 1.38283 * 118.32037 * 179.97438 * 15 14 4 17 17 Cl 1.73595 * 120.41678 * 179.97438 * 16 15 14 18 18 N 1.32685 * 119.16842 * 359.97438 * 16 15 14 19 19 C 1.31766 * 120.98710 * 0.02562 * 18 16 15 20 20 N 1.31767 * 121.84499 * 359.97438 * 19 18 16 21 21 H 1.09009 * 109.46962 * 299.99835 * 1 2 3 22 22 H 1.09004 * 109.47413 * 59.99720 * 1 2 3 23 23 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47103 * 239.99845 * 2 1 3 25 25 H 1.09004 * 109.46966 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46957 * 300.00011 * 3 2 1 27 27 H 1.08995 * 109.47031 * 60.00300 * 3 2 1 28 28 H 1.08997 * 109.47590 * 29.99762 * 5 4 2 29 29 H 1.09002 * 109.47240 * 150.00808 * 5 4 2 30 30 H 0.96998 * 120.00374 * 179.97438 * 9 8 6 31 31 H 1.07996 * 120.84337 * 0.24873 * 15 14 4 32 32 H 1.07999 * 119.07296 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.5698 -0.2626 2.5235 6 6 2.5083 0.7897 3.0556 7 1 3.3539 1.1081 2.4640 8 6 2.2873 1.3459 4.2977 9 7 3.1060 2.2646 4.7618 10 14 0.8243 0.7958 5.3206 11 1 1.2228 -0.3488 6.1789 12 1 0.3675 1.9204 6.1760 13 1 -0.2803 0.3782 4.4202 14 6 2.9042 -1.7487 1.0721 15 6 3.5110 -2.0250 -0.1540 16 6 4.3882 -3.0915 -0.2263 17 17 5.1729 -3.4842 -1.7242 18 7 4.6227 -3.8110 0.8636 19 6 4.0330 -3.5233 2.0063 20 7 3.1906 -2.5164 2.1197 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.5638 0.1507 2.4514 29 1 1.5636 -1.1185 3.1984 30 1 2.9504 2.6562 5.6355 31 1 3.3042 -1.4185 -1.0233 32 1 4.2467 -4.1292 2.8743 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = 49.428063 kcal Electronic energy + Delta-G solvation = -16944.830371 eV Core-core repulsion = 14159.831920 eV Total energy + Delta-G solvation = -2784.998451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.55402 -37.64696 -36.59353 -33.27853 -32.80909 -31.67148 -30.49221 -27.61146 -26.88560 -24.22817 -23.38350 -22.02248 -19.76082 -17.66684 -17.21028 -16.91955 -15.43586 -15.08425 -14.82847 -14.54031 -13.99900 -13.69617 -13.43584 -13.22229 -12.53802 -12.17009 -11.94502 -11.81553 -11.60774 -11.37935 -11.22966 -10.98277 -10.73289 -10.57793 -10.37814 -10.11128 -10.00484 -9.49075 -9.33569 -8.85114 -8.64543 -7.30248 -6.15400 -4.14316 1.26800 1.68949 1.86685 3.22502 3.27842 3.30761 3.38987 4.21235 4.32671 4.57309 4.88344 5.05351 5.16476 5.22571 5.35881 5.43805 5.60696 5.74101 5.84982 6.00160 6.08001 6.22366 6.36257 6.47528 6.65756 6.88235 6.90425 7.17347 7.51007 7.72466 7.87650 8.41937 8.63532 8.88592 9.43952 10.97482 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.006848 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.705346 B = 4087.996640 C = 4626.497886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.160 4.160 4 N -0.558 5.558 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.873 3.127 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.465 3.535 15 C -0.292 4.292 16 C 0.249 3.751 17 Cl -0.039 7.039 18 N -0.580 5.580 19 C 0.355 3.645 20 N -0.560 5.560 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.145 0.855 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 -7.316 -10.760 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 C -0.218 4.218 4 N -0.265 5.265 5 C 0.097 3.903 6 C -0.566 4.566 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.219 3.781 15 C -0.323 4.323 16 C 0.080 3.920 17 Cl -0.011 7.011 18 N -0.303 5.303 19 C 0.065 3.935 20 N -0.284 5.284 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.697 -7.539 -9.932 12.757 hybrid contribution -0.634 0.320 -0.118 0.720 sum -3.331 -7.218 -10.050 12.814 Atomic orbital electron populations 1.22174 0.94998 1.02027 1.02817 1.21108 0.94142 0.94013 0.86938 1.22189 1.01747 0.95135 1.02712 1.46984 1.42789 1.28158 1.08583 1.19809 0.95501 0.96385 0.78605 1.21322 1.12085 1.20415 1.02738 0.90594 1.24827 0.96205 0.94629 0.97163 1.69886 1.37158 1.27349 1.18975 0.86902 0.83376 0.78702 0.81000 1.19831 1.21149 1.19151 1.18431 0.85918 0.86066 0.87635 1.21788 1.06031 1.03888 1.00546 1.21420 0.91027 0.90939 0.88580 1.98381 1.79870 1.93981 1.28846 1.67725 1.30301 1.32900 0.99390 1.24586 0.85777 0.89807 0.93281 1.68071 1.20633 1.08054 1.31628 0.91249 0.91584 0.92722 0.90169 0.92468 0.92812 0.89767 0.94919 0.93709 0.92519 0.83712 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.06 37.16 0.34 -1.86 16 2 C 0.14 2.20 3.12 -67.93 -0.21 1.99 16 3 C -0.16 -2.57 8.62 37.16 0.32 -2.25 16 4 N -0.56 -10.83 2.49 -167.45 -0.42 -11.24 16 5 C 0.22 4.90 3.92 -5.19 -0.02 4.88 16 6 C -0.53 -14.03 8.41 -34.44 -0.29 -14.32 16 7 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 10 Si 0.87 20.55 27.47 -169.99 -4.67 15.89 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 14 C 0.46 8.98 7.35 -154.77 -1.14 7.84 16 15 C -0.29 -4.87 9.10 -39.07 -0.36 -5.23 16 16 C 0.25 4.11 7.33 -17.17 -0.13 3.98 16 17 Cl -0.04 -0.54 29.15 -51.86 -1.51 -2.05 16 18 N -0.58 -9.96 10.43 -11.76 -0.12 -10.08 16 19 C 0.36 6.05 12.28 -92.20 -1.13 4.91 16 20 N -0.56 -11.15 9.23 -13.82 -0.13 -11.28 16 21 H 0.07 1.04 6.51 -51.92 -0.34 0.70 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.08 5.57 -51.93 -0.29 0.79 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.60 6.93 -51.93 -0.36 1.24 16 28 H 0.03 0.72 5.22 -51.93 -0.27 0.45 16 29 H 0.04 1.07 6.70 -51.93 -0.35 0.72 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.15 2.08 6.10 -52.49 -0.32 1.76 16 32 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 281.94 15.07 4.25 4.25 Total: -1.00 -29.95 281.94 -8.16 -38.11 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.62 Total: 0.25 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.71 Total: 1.90 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.11 Total: -58.34 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.95 -8.16 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.536 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds