Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35917 * 117.00172 * 2 1 4 4 C 1.38791 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.38206 * 120.09331 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.11639 * 0.30620 * 5 4 3 7 7 Cl 1.73596 * 119.98830 * 179.72455 * 6 5 4 8 8 C 1.39012 * 120.01606 * 359.43945 * 6 5 4 9 9 N 1.39736 * 120.05387 * 180.29806 * 8 6 5 10 10 C 1.46497 * 120.00483 * 180.23566 * 9 8 6 11 11 H 1.09007 * 109.47110 * 325.00285 * 10 9 8 12 12 C 1.52995 * 109.47406 * 84.99971 * 10 9 8 13 13 C 1.50701 * 109.47226 * 205.00237 * 10 9 8 14 14 H 1.07992 * 120.00033 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99931 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99653 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99874 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47139 * 90.00110 * 17 15 13 19 19 H 1.48500 * 109.47223 * 210.00305 * 17 15 13 20 20 H 1.48508 * 109.47093 * 329.99937 * 17 15 13 21 21 C 1.38582 * 120.00648 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.47213 * 59.99942 * 1 2 3 23 23 H 1.09000 * 109.47683 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47096 * 300.00630 * 1 2 3 25 25 H 1.07995 * 119.95074 * 0.02833 * 4 3 2 26 26 H 1.08002 * 119.93697 * 180.02562 * 5 4 3 27 27 H 0.97003 * 119.99947 * 0.23975 * 9 8 6 28 28 H 1.09007 * 109.46729 * 60.00081 * 12 10 9 29 29 H 1.08993 * 109.47365 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.47336 * 300.01040 * 12 10 9 31 31 H 0.97006 * 119.99221 * 179.97438 * 16 15 13 32 32 H 1.08000 * 120.06071 * 359.94607 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2903 2.3751 -0.0005 5 6 1.9159 3.6075 -0.0011 6 6 3.2960 3.6847 -0.0075 7 17 4.0783 5.2344 -0.0153 8 6 4.0576 2.5218 -0.0016 9 7 5.4528 2.5990 -0.0018 10 6 6.2544 1.3728 -0.0008 11 1 5.7486 0.6085 0.5893 12 6 6.4281 0.8759 -1.4373 13 6 7.6071 1.6574 0.5994 14 1 7.8460 2.6522 0.9451 15 6 8.5398 0.6476 0.7071 16 7 8.2489 -0.5638 0.2856 17 14 10.2163 1.0001 1.4517 18 1 10.1647 0.7710 2.9180 19 1 11.2272 0.0974 0.8449 20 1 10.5897 2.4124 1.1841 21 6 3.4300 1.2837 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2119 2.3178 -0.0005 26 1 1.3253 4.5117 -0.0011 27 1 5.8907 3.4646 -0.0025 28 1 6.9340 1.6402 -2.0274 29 1 7.0249 -0.0362 -1.4366 30 1 5.4497 0.6701 -1.8715 31 1 8.9053 -1.2741 0.3611 32 1 4.0193 0.3786 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043317603.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = -40.676253 kcal Electronic energy + Delta-G solvation = -16551.466363 eV Core-core repulsion = 13730.267945 eV Total energy + Delta-G solvation = -2821.198418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09393 -39.16965 -37.36907 -36.70463 -34.56964 -31.60571 -31.31470 -28.76853 -27.96154 -27.25226 -24.12021 -22.87910 -21.72089 -19.59694 -18.42100 -17.43140 -17.33423 -16.74195 -16.58456 -16.25707 -15.57173 -15.06108 -14.73963 -14.47098 -14.00039 -13.72156 -13.30060 -13.14131 -13.10060 -12.88765 -12.71180 -12.64041 -12.31121 -12.16452 -12.01390 -11.66973 -11.53489 -11.10999 -10.85637 -10.51592 -9.21180 -8.27521 -8.16905 -6.35685 0.39274 0.63766 1.37661 1.42184 1.42694 1.53194 2.30098 2.40182 2.81017 2.90371 3.10435 3.86820 4.21807 4.27553 4.48523 4.49251 4.54773 4.71308 4.74903 4.83001 4.98335 5.07137 5.10829 5.30035 5.35085 5.40268 5.56975 5.69754 5.82881 6.06686 6.42461 6.53745 6.74666 7.05906 7.35853 8.85576 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.006479 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.771296 B = 4320.892464 C = 5387.713120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.176 3.824 4 C -0.261 4.261 5 C -0.016 4.016 6 C -0.172 4.172 7 Cl -0.079 7.079 8 C 0.259 3.741 9 N -0.719 5.719 10 C 0.274 3.726 11 H 0.013 0.987 12 C -0.138 4.138 13 C -0.549 4.549 14 H 0.060 0.940 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.256 4.256 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.165 0.835 26 H 0.161 0.839 27 H 0.397 0.603 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 5.680 -0.962 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.129 3.871 4 C -0.282 4.282 5 C -0.035 4.035 6 C -0.204 4.204 7 Cl -0.051 7.051 8 C 0.149 3.851 9 N -0.343 5.343 10 C 0.171 3.829 11 H 0.031 0.969 12 C -0.197 4.197 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.792 3.208 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.281 4.281 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.182 0.818 26 H 0.179 0.821 27 H 0.233 0.767 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.484 5.240 -0.982 15.434 hybrid contribution 1.248 0.315 0.316 1.325 sum -13.237 5.555 -0.667 14.370 Atomic orbital electron populations 1.23402 0.75936 1.05543 1.02769 1.86069 1.24035 1.27034 1.88154 1.18780 0.90891 0.85174 0.92267 1.21098 1.01055 0.90215 1.15796 1.20829 0.90625 0.98980 0.93046 1.20327 0.93447 0.84258 1.22339 1.98291 1.81475 1.27509 1.97814 1.17542 0.84735 0.92081 0.90769 1.45449 1.01629 1.09910 1.77270 1.18447 0.89240 0.82201 0.93049 0.96899 1.21986 0.98493 1.01670 0.97548 1.21489 0.99025 0.96679 1.41555 0.92206 1.25669 1.02292 0.94613 0.95415 1.70003 1.36497 1.01830 1.46712 0.85424 0.78728 0.78294 0.78387 1.20178 1.20531 1.19210 1.19759 0.92920 0.96291 1.19109 0.91081 0.86573 0.91168 0.81806 0.82099 0.76721 0.95150 0.91206 0.95805 0.92414 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -10.22 10.49 -92.62 -0.97 -11.19 16 3 C 0.18 5.78 6.68 22.48 0.15 5.93 16 4 C -0.26 -6.72 9.04 22.39 0.20 -6.52 16 5 C -0.02 -0.42 9.82 22.26 0.22 -0.20 16 6 C -0.17 -5.75 6.34 22.45 0.14 -5.61 16 7 Cl -0.08 -2.43 27.58 -2.72 -0.08 -2.51 16 8 C 0.26 10.41 6.63 38.20 0.25 10.66 16 9 N -0.72 -31.95 5.20 -322.46 -1.68 -33.63 16 10 C 0.27 14.07 2.25 44.24 0.10 14.17 16 11 H 0.01 0.75 6.48 -2.38 -0.02 0.74 16 12 C -0.14 -6.89 9.20 71.98 0.66 -6.23 16 13 C -0.55 -29.93 8.73 25.60 0.22 -29.71 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.02 1.11 5.30 84.66 0.45 1.56 16 16 N -0.91 -51.52 11.32 21.45 0.24 -51.28 16 17 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 C -0.26 -10.37 8.79 22.49 0.20 -10.17 16 22 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 23 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.16 2.89 6.29 -2.91 -0.02 2.87 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 27 H 0.40 16.97 7.21 -92.71 -0.67 16.30 16 28 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 30 H 0.02 1.09 7.71 -2.39 -0.02 1.07 16 31 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 32 H 0.11 5.11 6.11 -2.91 -0.02 5.09 16 Total: -1.00 -61.24 283.62 3.73 -57.50 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.48 Total: 20.93 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 3.71 Total: -24.70 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.43 Total: -84.91 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.97 Total: -11.19 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.08 Total: -2.51 kcal Total: -61.24 3.73 -57.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043317603.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.826 kcal (2) G-P(sol) polarization free energy of solvation -61.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds