Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35925 * 116.99615 * 2 1 4 4 C 1.38784 * 120.00975 * 359.72969 * 3 2 1 5 5 C 1.38206 * 120.09678 * 179.71938 * 4 3 2 6 6 C 1.38227 * 120.11347 * 0.55142 * 5 4 3 7 7 Cl 1.73598 * 119.99208 * 179.74416 * 6 5 4 8 8 C 1.39016 * 120.01742 * 359.72266 * 6 5 4 9 9 N 1.39741 * 120.05051 * 179.97438 * 8 6 5 10 10 C 1.46497 * 119.99981 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47448 * 35.00214 * 10 9 8 12 12 C 1.52995 * 109.47129 * 275.00299 * 10 9 8 13 13 C 1.50703 * 109.47187 * 155.00141 * 10 9 8 14 14 H 1.08002 * 119.99797 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99857 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00240 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99604 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47292 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47204 * 119.99915 * 17 15 13 20 20 H 1.48503 * 109.47111 * 239.99856 * 17 15 13 21 21 C 1.38589 * 120.00151 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47043 * 300.00202 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99800 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.95045 * 359.96918 * 4 3 2 26 26 H 1.07991 * 119.94108 * 180.25008 * 5 4 3 27 27 H 0.96995 * 119.99794 * 0.02578 * 9 8 6 28 28 H 1.09005 * 109.47446 * 180.02562 * 12 10 9 29 29 H 1.09004 * 109.47007 * 299.99718 * 12 10 9 30 30 H 1.09001 * 109.47586 * 59.99973 * 12 10 9 31 31 H 0.96996 * 120.00151 * 180.02562 * 16 15 13 32 32 H 1.07998 * 120.06254 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2903 2.3752 -0.0057 5 6 1.9157 3.6076 0.0002 6 6 3.2958 3.6849 0.0002 7 17 4.0782 5.2346 0.0008 8 6 4.0575 2.5220 0.0001 9 7 5.4528 2.5993 -0.0004 10 6 6.2544 1.3731 -0.0010 11 1 5.7484 0.6085 -0.5905 12 6 6.4287 0.8770 1.4357 13 6 7.6068 1.6574 -0.6019 14 1 7.8453 2.6519 -0.9491 15 6 8.5394 0.6475 -0.7095 16 7 8.2489 -0.5636 -0.2873 17 14 10.2161 1.0001 -1.4537 18 1 10.2922 2.4300 -1.8473 19 1 11.2736 0.7045 -0.4538 20 1 10.4153 0.1460 -2.6521 21 6 3.4300 1.2838 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.2118 2.3178 -0.0106 26 1 1.3252 4.5117 -0.0002 27 1 5.8905 3.4649 -0.0004 28 1 7.0255 -0.0351 1.4354 29 1 6.9348 1.6416 2.0252 30 1 5.4505 0.6714 1.8704 31 1 8.9051 -1.2739 -0.3626 32 1 4.0193 0.3787 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043317605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = -40.722252 kcal Electronic energy + Delta-G solvation = -16551.539181 eV Core-core repulsion = 13730.338768 eV Total energy + Delta-G solvation = -2821.200413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09328 -39.16921 -37.36933 -36.70500 -34.57115 -31.60625 -31.31456 -28.76853 -27.96159 -27.25454 -24.11997 -22.87923 -21.72196 -19.59695 -18.42280 -17.43368 -17.33498 -16.73981 -16.58440 -16.25845 -15.56834 -15.06249 -14.74146 -14.47155 -14.00336 -13.72529 -13.29959 -13.14178 -13.10036 -12.90077 -12.70638 -12.62386 -12.32062 -12.16549 -12.01433 -11.67120 -11.53484 -11.09659 -10.85907 -10.52035 -9.21168 -8.27641 -8.16971 -6.35786 0.39254 0.63776 1.37656 1.40922 1.42712 1.54232 2.30131 2.40114 2.81030 2.90345 3.10299 3.86847 4.21803 4.27545 4.48532 4.49283 4.54790 4.71299 4.74935 4.83020 4.98290 5.07102 5.10834 5.30050 5.35075 5.40277 5.57084 5.69742 5.82879 6.06625 6.42462 6.53741 6.74793 7.05939 7.35829 8.85625 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.006479 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.796385 B = 4320.546696 C = 5387.454671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.176 3.824 4 C -0.261 4.261 5 C -0.016 4.016 6 C -0.172 4.172 7 Cl -0.079 7.079 8 C 0.259 3.741 9 N -0.719 5.719 10 C 0.274 3.726 11 H 0.013 0.987 12 C -0.138 4.138 13 C -0.548 4.548 14 H 0.060 0.940 15 C 0.020 3.980 16 N -0.912 5.912 17 Si 0.967 3.033 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.256 4.256 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.165 0.835 26 H 0.161 0.839 27 H 0.397 0.603 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.879 5.681 0.964 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.129 3.871 4 C -0.282 4.282 5 C -0.035 4.035 6 C -0.204 4.204 7 Cl -0.051 7.051 8 C 0.149 3.851 9 N -0.343 5.343 10 C 0.170 3.830 11 H 0.031 0.969 12 C -0.197 4.197 13 C -0.586 4.586 14 H 0.078 0.922 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.281 4.281 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.134 0.866 25 H 0.182 0.818 26 H 0.179 0.821 27 H 0.233 0.767 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.495 5.243 0.979 15.446 hybrid contribution 1.253 0.307 -0.300 1.325 sum -13.242 5.551 0.679 14.375 Atomic orbital electron populations 1.23401 0.75938 1.05542 1.02769 1.86071 1.24035 1.27028 1.88158 1.18781 0.90892 0.85173 0.92269 1.21097 1.01058 0.90215 1.15789 1.20827 0.90624 0.98979 0.93050 1.20329 0.93448 0.84257 1.22332 1.98291 1.81472 1.27513 1.97815 1.17543 0.84735 0.92081 0.90773 1.45448 1.01629 1.09908 1.77274 1.18452 0.89255 0.82205 0.93053 0.96886 1.21988 0.98497 1.01670 0.97547 1.21517 0.99016 0.96686 1.41415 0.92219 1.25666 1.02291 0.94608 0.95439 1.70000 1.36410 1.01851 1.46802 0.85374 0.78996 0.78394 0.78046 1.19229 1.20247 1.20517 1.19760 0.92919 0.96289 1.19105 0.91083 0.91165 0.86576 0.81804 0.82101 0.76723 0.91212 0.95144 0.95801 0.92414 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -10.21 10.50 -92.70 -0.97 -11.19 16 3 C 0.18 5.78 6.68 22.48 0.15 5.93 16 4 C -0.26 -6.72 9.04 22.39 0.20 -6.52 16 5 C -0.02 -0.42 9.82 22.26 0.22 -0.20 16 6 C -0.17 -5.75 6.34 22.45 0.14 -5.61 16 7 Cl -0.08 -2.44 27.58 -2.72 -0.08 -2.51 16 8 C 0.26 10.40 6.63 38.20 0.25 10.66 16 9 N -0.72 -31.95 5.20 -322.45 -1.68 -33.63 16 10 C 0.27 14.05 2.25 44.24 0.10 14.15 16 11 H 0.01 0.76 6.49 -2.39 -0.02 0.74 16 12 C -0.14 -6.89 9.20 71.98 0.66 -6.23 16 13 C -0.55 -29.87 8.73 25.60 0.22 -29.64 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 15 C 0.02 1.10 5.30 84.66 0.45 1.55 16 16 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 17 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.26 -10.36 8.78 22.49 0.20 -10.16 16 22 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 23 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 24 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.16 2.89 6.29 -2.91 -0.02 2.87 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 27 H 0.40 16.97 7.21 -92.71 -0.67 16.31 16 28 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 29 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.02 1.09 7.70 -2.39 -0.02 1.07 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.42 16 32 H 0.11 5.11 6.11 -2.91 -0.02 5.09 16 Total: -1.00 -61.27 283.61 3.73 -57.53 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.48 Total: 20.82 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.71 Total: -24.66 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.43 Total: -84.89 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.97 Total: -11.19 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.51 kcal Total: -61.27 3.73 -57.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043317605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.812 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds