Wall clock time and date at job start Mon Mar 30 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47012 * 2 1 4 4 N 1.46897 * 109.46851 * 239.99988 * 2 1 3 5 5 C 1.52996 * 109.47337 * 119.99605 * 2 1 3 6 6 C 1.50702 * 109.47222 * 184.99972 * 5 2 1 7 7 C 1.38320 * 119.92441 * 90.00137 * 6 5 2 8 8 C 1.38098 * 120.08866 * 179.97438 * 7 6 5 9 9 C 1.38864 * 119.94691 * 0.02562 * 8 7 6 10 10 O 1.35763 * 120.07668 * 180.02562 * 9 8 7 11 11 C 1.34834 * 116.99621 * 354.39506 * 10 9 8 12 12 H 1.08001 * 119.99914 * 5.06697 * 11 10 9 13 13 C 1.38645 * 119.99650 * 185.06841 * 11 10 9 14 14 N 1.31565 * 120.00615 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99773 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47246 * 60.00166 * 15 13 11 17 17 H 1.48505 * 109.47372 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47433 * 299.99785 * 15 13 11 19 19 C 1.38973 * 119.85203 * 359.97438 * 9 8 7 20 20 Cl 1.73601 * 120.04651 * 180.02562 * 19 9 8 21 21 C 1.38226 * 119.90630 * 359.74996 * 19 9 8 22 22 H 1.08996 * 109.47134 * 60.00152 * 1 2 3 23 23 H 1.09006 * 109.46720 * 299.99900 * 1 2 3 24 24 H 1.09000 * 109.46772 * 180.02562 * 1 2 3 25 25 H 1.00899 * 111.00530 * 296.03919 * 4 2 1 26 26 H 1.00901 * 111.00406 * 59.99970 * 4 2 1 27 27 H 1.09001 * 109.47379 * 305.00459 * 5 2 1 28 28 H 1.09004 * 109.46962 * 65.00250 * 5 2 1 29 29 H 1.07991 * 119.95446 * 0.02562 * 7 6 5 30 30 H 1.08002 * 120.02360 * 180.02562 * 8 7 6 31 31 H 0.96998 * 120.00471 * 180.02562 * 14 13 11 32 32 H 1.07994 * 119.97408 * 180.27533 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0401 -0.7211 1.2492 6 6 3.5420 -0.6148 1.3127 7 6 4.1312 0.4508 1.9690 8 6 5.5072 0.5513 2.0296 9 6 6.3002 -0.4185 1.4304 10 8 7.6531 -0.3225 1.4889 11 6 8.1641 0.7963 2.0415 12 1 7.5059 1.5279 2.4864 13 6 9.5344 1.0074 2.0384 14 7 10.3362 0.1159 1.4968 15 14 10.2423 2.5570 2.8045 16 1 9.8742 2.6111 4.2422 17 1 11.7214 2.5430 2.6730 18 1 9.6942 3.7485 2.1080 19 6 5.7057 -1.4880 0.7717 20 17 6.6922 -2.7036 0.0214 21 6 4.3279 -1.5857 0.7196 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.7503 -1.6648 -1.1909 26 1 1.6961 -0.2350 -2.0386 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 3.5143 1.2046 2.4352 30 1 5.9661 1.3835 2.5427 31 1 11.2949 0.2635 1.4950 32 1 3.8648 -2.4187 0.2118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043491836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:31 Heat of formation + Delta-G solvation = -43.423697 kcal Electronic energy + Delta-G solvation = -16352.167159 eV Core-core repulsion = 13530.849603 eV Total energy + Delta-G solvation = -2821.317556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83888 -38.84880 -37.33409 -36.66248 -34.27869 -31.82026 -31.54230 -29.60613 -27.73726 -26.44473 -23.64862 -22.60025 -21.27157 -19.84525 -18.88474 -17.10082 -16.74267 -16.38525 -16.12424 -15.66532 -15.38845 -15.11071 -14.68704 -14.59715 -14.02475 -13.67739 -13.55446 -13.41782 -12.87616 -12.80027 -12.65590 -12.34492 -12.19812 -12.16038 -11.87638 -11.64729 -11.51119 -11.21464 -10.73521 -9.58993 -9.38848 -8.80982 -8.42957 -6.10926 0.47684 0.69197 1.36450 1.47522 1.51915 1.53792 2.19464 2.79823 3.13624 3.46114 3.77375 4.00066 4.14646 4.20260 4.35201 4.48781 4.57968 4.60687 4.69336 4.94431 5.01146 5.05672 5.13368 5.19266 5.23504 5.39730 5.48466 5.60797 5.81975 6.00779 6.15416 6.47087 6.76951 6.99974 7.78255 8.78977 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.005762 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.444615 B = 4858.045195 C = 5644.494314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 H 0.066 0.934 4 N -0.854 5.854 5 C -0.055 4.055 6 C -0.130 4.130 7 C -0.065 4.065 8 C -0.234 4.234 9 C 0.113 3.887 10 O -0.213 6.213 11 C -0.416 4.416 12 H 0.103 0.897 13 C -0.020 4.020 14 N -0.915 5.915 15 Si 1.018 2.982 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.122 4.122 20 Cl -0.092 7.092 21 C -0.038 4.038 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.343 0.657 26 H 0.344 0.656 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.127 0.873 31 H 0.272 0.728 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.785 0.785 -0.859 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.018 4.018 3 H 0.084 0.916 4 N -0.385 5.385 5 C -0.093 4.093 6 C -0.131 4.131 7 C -0.083 4.083 8 C -0.254 4.254 9 C 0.062 3.938 10 O -0.119 6.119 11 C -0.492 4.492 12 H 0.120 0.880 13 C -0.218 4.218 14 N -0.553 5.553 15 Si 0.837 3.163 16 H -0.181 1.181 17 H -0.198 1.198 18 H -0.182 1.182 19 C -0.150 4.150 20 Cl -0.063 7.063 21 C -0.056 4.056 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.563 0.670 -0.768 17.592 hybrid contribution 0.050 0.214 -0.137 0.259 sum -17.513 0.884 -0.905 17.559 Atomic orbital electron populations 1.22565 0.96080 1.02452 1.02679 1.21385 0.92568 0.97784 0.90083 0.91560 1.58796 1.68277 1.07023 1.04396 1.20538 0.88792 1.01780 0.98174 1.19583 0.96566 0.95271 1.01662 1.21093 0.92678 0.97640 0.96895 1.21204 0.95054 1.01500 1.07630 1.19609 0.85084 0.94397 0.94758 1.84030 1.15550 1.40394 1.71917 1.21814 0.92186 0.97771 1.37456 0.87954 1.26564 0.95073 1.02678 0.97492 1.70211 1.04506 1.36758 1.43806 0.84666 0.77238 0.75570 0.78834 1.18067 1.19844 1.18205 1.20375 0.92250 0.94187 1.08154 1.98283 1.71851 1.54808 1.81376 1.20654 0.88408 0.99519 0.97059 0.92399 0.91432 0.92048 0.84324 0.84227 0.89191 0.90363 0.83456 0.85576 0.91941 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.48 71.98 0.68 -1.58 16 2 C 0.09 1.69 3.35 44.92 0.15 1.84 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 4 N -0.85 -16.42 8.64 -168.69 -1.46 -17.88 16 5 C -0.06 -1.10 4.96 29.85 0.15 -0.95 16 6 C -0.13 -3.88 4.95 -19.83 -0.10 -3.98 16 7 C -0.07 -2.14 9.69 22.26 0.22 -1.93 16 8 C -0.23 -10.07 9.17 22.39 0.21 -9.87 16 9 C 0.11 5.73 6.64 22.60 0.15 5.88 16 10 O -0.21 -12.90 9.22 -22.93 -0.21 -13.11 16 11 C -0.42 -24.29 9.49 67.92 0.64 -23.65 16 12 H 0.10 5.42 5.21 -2.91 -0.02 5.41 16 13 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 14 N -0.92 -56.88 13.67 21.61 0.30 -56.59 16 15 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 C -0.12 -5.44 6.34 22.44 0.14 -5.29 16 20 Cl -0.09 -4.09 28.51 -2.72 -0.08 -4.17 16 21 C -0.04 -1.31 9.09 22.28 0.20 -1.11 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.34 5.59 8.98 -89.69 -0.81 4.78 16 26 H 0.34 5.65 9.04 -89.69 -0.81 4.84 16 27 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 28 H 0.08 1.38 8.08 -2.38 -0.02 1.36 16 29 H 0.15 3.72 8.06 -2.92 -0.02 3.69 16 30 H 0.13 5.44 5.64 -2.91 -0.02 5.42 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -71.06 291.60 3.02 -68.03 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.46 Total: 19.96 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 2.91 Total: -41.33 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.16 Total: -74.46 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.21 Total: -13.11 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 17 Polarization: -4.09 SS G_CDS: -0.08 Total: -4.17 kcal Total: -71.06 3.02 -68.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043491836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.609 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds