Wall clock time and date at job start Mon Mar 30 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 N 1.46904 * 109.47374 * 119.99712 * 2 1 3 5 5 C 1.46904 * 110.99792 * 52.09253 * 4 2 1 6 6 C 1.50702 * 109.47268 * 59.03240 * 5 4 2 7 7 H 1.08003 * 119.99828 * 4.37736 * 6 5 4 8 8 C 1.37870 * 119.99924 * 184.37671 * 6 5 4 9 9 N 1.31514 * 120.00541 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99771 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47329 * 89.99785 * 10 8 6 12 12 H 1.48500 * 109.46979 * 209.99918 * 10 8 6 13 13 H 1.48495 * 109.47084 * 329.99769 * 10 8 6 14 14 C 1.39051 * 111.00057 * 176.04375 * 4 2 1 15 15 N 1.32619 * 120.10503 * 337.71589 * 14 4 2 16 16 C 1.32266 * 119.92815 * 180.02562 * 15 14 4 17 17 C 1.38136 * 120.13703 * 359.97438 * 16 15 14 18 18 N 1.32296 * 120.20500 * 0.02562 * 17 16 15 19 19 C 1.32018 * 120.06833 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.06680 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.47143 * 294.03962 * 1 2 3 22 22 H 1.08995 * 109.47151 * 54.04202 * 1 2 3 23 23 H 1.08995 * 109.47002 * 174.04316 * 1 2 3 24 24 H 1.08999 * 109.47659 * 239.99684 * 2 1 3 25 25 H 1.09001 * 109.47338 * 183.93710 * 3 2 1 26 26 H 1.09007 * 109.47106 * 303.93282 * 3 2 1 27 27 H 1.09000 * 109.47144 * 63.93173 * 3 2 1 28 28 H 1.09001 * 109.47273 * 179.03520 * 5 4 2 29 29 H 1.09001 * 109.46993 * 299.03677 * 5 4 2 30 30 H 0.96994 * 120.00408 * 180.02562 * 9 8 6 31 31 H 1.08001 * 119.93010 * 179.97438 * 16 15 14 32 32 H 1.07993 * 119.89900 * 179.72698 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4008 -2.0182 1.3316 6 6 1.7161 -2.8437 0.1108 7 1 2.3739 -2.4518 -0.6509 8 6 1.1648 -4.0991 -0.0336 9 7 0.3634 -4.5761 0.8937 10 14 1.5562 -5.1226 -1.5464 11 1 2.7593 -5.9528 -1.2848 12 1 0.4038 -6.0057 -1.8584 13 1 1.8167 -4.2230 -2.6988 14 6 3.4068 -0.7890 1.1877 15 7 4.0695 -0.7085 0.0418 16 6 5.3889 -0.8013 0.0346 17 6 6.0779 -0.9815 1.2181 18 7 5.4222 -1.0626 2.3643 19 6 4.1053 -0.9720 2.3808 20 17 3.2449 -1.0791 3.8848 21 1 -0.3633 0.4186 0.9385 22 1 -0.3633 0.6034 -0.8318 23 1 -0.3633 -1.0221 -0.1066 24 1 1.8934 -0.5139 -0.8899 25 1 3.1277 1.4433 -0.0706 26 1 1.6202 1.9763 -0.8527 27 1 1.7354 1.9356 0.9231 28 1 1.7936 -2.5159 2.2182 29 1 0.3205 -1.9070 1.4259 30 1 -0.0241 -5.4595 0.7922 31 1 5.9286 -0.7361 -0.8987 32 1 7.1549 -1.0613 1.2073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043538300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:16 Heat of formation + Delta-G solvation = 52.362609 kcal Electronic energy + Delta-G solvation = -17459.704293 eV Core-core repulsion = 14674.833093 eV Total energy + Delta-G solvation = -2784.871199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80694 -37.62890 -36.17208 -33.54744 -32.83537 -31.82228 -29.60284 -27.11370 -25.98594 -24.29725 -23.38096 -22.17401 -19.49209 -17.35748 -17.07562 -16.63243 -15.76942 -15.42960 -14.52202 -14.36599 -13.92486 -13.63250 -12.98635 -12.57385 -12.03844 -11.78342 -11.65554 -11.47197 -11.22618 -11.19161 -11.08206 -10.83812 -10.71094 -10.50032 -10.37882 -10.13594 -9.94893 -9.84171 -8.79768 -8.67030 -8.49955 -7.51329 -6.13639 -4.21402 1.13881 1.50106 2.28593 3.22877 3.30094 3.33662 3.95720 4.28683 4.34537 4.66284 4.73424 5.16477 5.20081 5.41302 5.57786 5.66323 5.74638 5.99838 6.21461 6.28819 6.37311 6.47396 6.54616 6.94329 6.95440 7.09471 7.37210 7.42987 7.68646 7.81864 7.96224 8.08335 8.22931 8.87436 9.45447 10.92898 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.009459 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.417231 B = 2959.586153 C = 3150.081070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 C -0.143 4.143 4 N -0.475 5.475 5 C 0.189 3.811 6 C -0.555 4.555 7 H 0.068 0.932 8 C 0.069 3.931 9 N -0.887 5.887 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.332 3.668 15 N -0.455 5.455 16 C 0.070 3.930 17 C 0.015 3.985 18 N -0.426 5.426 19 C 0.118 3.882 20 Cl -0.013 7.013 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.166 0.834 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 8.586 -0.442 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 C -0.200 4.200 4 N -0.195 5.195 5 C 0.067 3.933 6 C -0.593 4.593 7 H 0.087 0.913 8 C -0.134 4.134 9 N -0.525 5.525 10 Si 0.717 3.283 11 H -0.207 1.207 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.096 3.904 15 N -0.174 5.174 16 C -0.091 4.091 17 C -0.145 4.145 18 N -0.143 5.143 19 C -0.054 4.054 20 Cl 0.016 6.984 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.852 8.688 0.156 10.476 hybrid contribution 0.471 -1.235 -1.309 1.861 sum 6.323 7.452 -1.154 9.841 Atomic orbital electron populations 1.21850 0.94466 1.03136 1.00566 1.21394 0.95102 0.92840 0.92539 1.21876 1.00634 0.96512 1.01017 1.60285 0.98805 1.22732 1.37665 1.20070 0.96010 0.79668 0.97552 1.21797 1.29820 1.01250 1.06469 0.91349 1.24903 0.94658 0.97538 0.96310 1.69931 1.30971 1.18042 1.33546 0.86618 0.77970 0.80274 0.83393 1.20723 1.21027 1.19727 1.20493 0.93043 0.89655 0.87191 1.68805 1.08737 1.12956 1.26922 1.23617 0.90715 0.95273 0.99526 1.23299 1.01199 1.02049 0.87940 1.67617 1.07151 1.09260 1.30250 1.22223 0.89973 1.04526 0.88657 1.98380 1.73846 1.96020 1.30197 0.92919 0.93293 0.90618 0.90884 0.93367 0.92742 0.92921 0.94209 0.92572 0.92638 0.81697 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.46 37.16 0.31 -2.26 16 2 C 0.09 1.71 1.84 -67.71 -0.12 1.58 16 3 C -0.14 -2.32 9.01 37.16 0.33 -1.99 16 4 N -0.48 -10.03 4.10 -166.81 -0.68 -10.72 16 5 C 0.19 4.64 4.33 -4.97 -0.02 4.62 16 6 C -0.55 -14.70 7.56 -34.44 -0.26 -14.96 16 7 H 0.07 1.84 5.87 -52.48 -0.31 1.53 16 8 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 9 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 10 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.33 6.82 4.38 -154.66 -0.68 6.14 16 15 N -0.45 -8.71 7.06 -12.21 -0.09 -8.80 16 16 C 0.07 1.07 11.21 -17.40 -0.20 0.88 16 17 C 0.01 0.22 11.21 -17.39 -0.19 0.02 16 18 N -0.43 -7.75 10.48 -10.01 -0.10 -7.86 16 19 C 0.12 2.36 7.15 -17.02 -0.12 2.24 16 20 Cl -0.01 -0.24 27.27 -51.86 -1.41 -1.65 16 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.56 6.49 -51.93 -0.34 1.23 16 24 H 0.07 1.57 6.11 -51.93 -0.32 1.25 16 25 H 0.05 0.81 6.60 -51.93 -0.34 0.46 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 1.05 6.76 -51.93 -0.35 0.70 16 29 H 0.06 1.45 6.39 -51.93 -0.33 1.11 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -29.23 278.89 -7.08 -36.31 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.66 Total: -1.29 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.04 Total: -1.93 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.14 Total: -51.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.41 Total: -1.65 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.23 -7.08 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043538300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.668 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds