Wall clock time and date at job start Mon Mar 30 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00162 * 2 1 4 4 H 1.08999 * 109.47359 * 324.99770 * 3 2 1 5 5 C 1.53001 * 109.47179 * 84.99906 * 3 2 1 6 6 C 1.50696 * 109.47358 * 204.99715 * 3 2 1 7 7 C 1.38114 * 120.02923 * 340.00465 * 6 3 2 8 8 C 1.38387 * 120.05795 * 179.97438 * 7 6 3 9 9 Cl 1.73599 * 119.94268 * 180.02562 * 8 7 6 10 10 C 1.38432 * 120.11248 * 0.02562 * 8 7 6 11 11 C 1.38068 * 120.05575 * 0.02562 * 10 8 7 12 12 C 1.38859 * 120.02839 * 159.72651 * 6 3 2 13 13 O 1.35758 * 120.05468 * 359.97438 * 12 6 3 14 14 C 1.34827 * 116.99965 * 174.14478 * 13 12 6 15 15 H 1.08006 * 119.99680 * 5.07212 * 14 13 12 16 16 C 1.38644 * 120.00056 * 185.06474 * 14 13 12 17 17 N 1.31556 * 120.00202 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47035 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47181 * 119.99957 * 18 16 14 21 21 H 1.48503 * 109.47336 * 240.00407 * 18 16 14 22 22 H 1.09003 * 109.47508 * 300.00399 * 1 2 3 23 23 H 1.09003 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46906 * 59.99975 * 1 2 3 25 25 H 1.00899 * 110.99711 * 123.95561 * 2 1 3 26 26 H 1.09004 * 109.46921 * 300.00064 * 5 3 2 27 27 H 1.08999 * 109.47086 * 59.99696 * 5 3 2 28 28 H 1.08993 * 109.47379 * 180.02562 * 5 3 2 29 29 H 1.08001 * 119.97246 * 359.97438 * 7 6 3 30 30 H 1.07994 * 119.97370 * 179.97438 * 10 8 7 31 31 H 1.08000 * 120.03326 * 179.97438 * 11 10 8 32 32 H 0.97002 * 120.00565 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8926 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.1102 0.2097 -0.6635 8 6 5.3793 0.2158 -1.2151 9 17 6.2971 -1.2556 -1.2935 10 6 5.9181 1.3933 -1.7046 11 6 5.1904 2.5650 -1.6430 12 6 3.9136 2.5602 -1.0959 13 8 3.1931 3.7095 -1.0407 14 6 3.8159 4.8414 -1.4264 15 1 4.8138 4.7957 -1.8369 16 6 3.1751 6.0640 -1.2963 17 7 1.9597 6.1197 -0.7959 18 14 4.0376 7.6322 -1.8314 19 1 5.3863 7.3007 -2.3571 20 1 3.2419 8.2966 -2.8948 21 1 4.1701 8.5459 -0.6682 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8305 -0.5261 0.7814 26 1 1.0611 1.8872 1.8713 27 1 2.7165 1.2517 2.0265 28 1 2.4510 2.9103 1.4370 29 1 3.6922 -0.7101 -0.2819 30 1 6.9089 1.3956 -2.1343 31 1 5.6113 3.4835 -2.0246 32 1 1.5115 6.9751 -0.7045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050209848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:26 Heat of formation + Delta-G solvation = -13.574768 kcal Electronic energy + Delta-G solvation = -16757.642787 eV Core-core repulsion = 13937.619577 eV Total energy + Delta-G solvation = -2820.023210 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.43833 -36.99987 -36.36017 -35.23327 -32.38589 -31.15801 -29.18554 -28.09638 -25.53166 -24.80185 -22.91647 -21.34084 -20.12396 -18.07961 -17.16638 -15.74057 -15.23364 -14.81755 -14.50365 -13.98040 -13.84380 -13.79781 -13.40503 -12.82701 -12.52847 -12.25492 -12.13982 -11.87103 -11.79663 -11.48043 -11.30751 -11.16530 -10.75892 -10.63716 -10.49053 -10.30624 -10.23852 -9.40015 -8.88682 -8.21702 -8.10085 -7.19795 -6.54991 -4.12792 2.05553 2.14453 2.88178 3.06984 3.09281 3.14364 3.89085 4.36468 4.56948 4.98829 5.16550 5.33903 5.51720 5.64837 5.69741 5.73382 5.85368 5.88708 6.09436 6.16048 6.27672 6.36708 6.48967 6.67442 6.71779 6.92246 6.95539 7.14989 7.26833 7.43471 7.60651 7.68071 7.89699 8.90996 9.57378 10.62250 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.007436 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.598341 B = 3764.461051 C = 5139.782295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.689 5.689 3 C 0.141 3.859 4 H 0.091 0.909 5 C -0.170 4.170 6 C -0.136 4.136 7 C -0.043 4.043 8 C -0.125 4.125 9 Cl -0.109 7.109 10 C -0.064 4.064 11 C -0.226 4.226 12 C 0.159 3.841 13 O -0.167 6.167 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.042 3.958 17 N -0.858 5.858 18 Si 0.940 3.060 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.020 0.980 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.335 0.665 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -8.147 1.733 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.318 5.318 3 C 0.032 3.968 4 H 0.109 0.891 5 C -0.229 4.229 6 C -0.139 4.139 7 C -0.062 4.062 8 C -0.152 4.152 9 Cl -0.081 7.081 10 C -0.083 4.083 11 C -0.246 4.246 12 C 0.104 3.896 13 O -0.070 6.070 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.493 5.493 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.437 -8.099 1.157 8.306 hybrid contribution 0.430 0.982 0.559 1.209 sum 1.867 -7.117 1.716 7.555 Atomic orbital electron populations 1.22177 0.88187 1.01088 1.00568 1.60548 1.07376 1.14550 1.49359 1.20088 0.93139 0.88318 0.95245 0.89053 1.22353 1.00689 1.03347 0.96489 1.18728 0.96974 0.91042 1.07117 1.20327 0.91154 0.97455 0.97303 1.20343 0.94965 0.86570 1.13346 1.98272 1.74737 1.37200 1.97887 1.20614 0.98983 0.90853 0.97852 1.21051 0.96079 0.98565 1.08877 1.19190 0.90134 0.87752 0.92528 1.83962 1.37295 1.12303 1.73446 1.21398 1.01121 0.82020 1.42354 0.88920 1.25270 0.95985 0.98497 0.96527 1.70031 1.11704 1.26504 1.41041 0.85660 0.79114 0.80255 0.78518 1.19027 1.20096 1.20099 0.96106 0.91971 0.91665 0.84717 0.93350 0.93202 0.90588 0.85445 0.86606 0.84750 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.50 60.06 0.63 1.02 16 2 N -0.69 -10.49 5.44 -115.25 -0.63 -11.12 16 3 C 0.14 2.61 2.47 -68.87 -0.17 2.44 16 4 H 0.09 1.93 7.50 -51.93 -0.39 1.54 16 5 C -0.17 -2.96 9.14 37.16 0.34 -2.62 16 6 C -0.14 -2.76 5.10 -104.44 -0.53 -3.29 16 7 C -0.04 -0.79 9.10 -39.57 -0.36 -1.15 16 8 C -0.13 -2.27 6.32 -39.45 -0.25 -2.52 16 9 Cl -0.11 -1.72 28.95 -51.86 -1.50 -3.22 16 10 C -0.06 -1.19 9.82 -39.57 -0.39 -1.58 16 11 C -0.23 -4.76 9.17 -39.40 -0.36 -5.12 16 12 C 0.16 3.64 6.62 -39.10 -0.26 3.38 16 13 O -0.17 -4.42 8.93 0.03 0.00 -4.42 16 14 C -0.39 -10.39 9.49 30.88 0.29 -10.10 16 15 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 17 N -0.86 -23.88 13.67 55.48 0.76 -23.12 16 18 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H 0.02 0.26 7.44 -51.93 -0.39 -0.12 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 25 H 0.34 4.50 8.09 -39.29 -0.32 4.18 16 26 H 0.05 0.76 7.45 -51.93 -0.39 0.37 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 29 H 0.13 2.10 6.84 -52.49 -0.36 1.74 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -27.56 288.04 -6.86 -34.41 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.65 Total: 6.93 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -1.15 Total: -18.54 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.13 Total: -34.24 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: 0.00 Total: -4.42 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.50 Total: -3.22 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.56 -6.86 -34.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050209848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.836 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds